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Mol. Cells 2001; 12(3): 380-390

Published online January 1, 1970

© The Korean Society for Molecular and Cellular Biology

Alternative Transcriptional Initiation and Splicing of Mouse Lamc2 Message

Gwanghee Lee, Moon Gyo Kim, Jeong Bin Yim, Seung Hwan Hong

Abstract

To investigate the mechanism of two forms of messages (5.1 and 2.4 kb) in mouse Lamc2, a gene encoding for the g2 chain of epithelial cell?specific laminin 5, we analyzed approximately 40 kb of genomic DNA con-taining the sequences from the first intron to the 23rd exon to the 3?untranscribed region. With the 5?rapid amplification of cDNA end (RACE) and primer exten-sion technique using RNA from mouse kidney and thymic epithelial cells, we found that the smaller mes-sage starts at the 2895th base of the cDNA within the 19th exon. Upstream sequences of this alternative start site showed the promoter activity in the reporter assay with the secreted form of alkaline phosphatase (SEAP). We also identified a novel alternatively spliced exon (exon 19B) that includes two stop codons. These results revealed two possible additional open reading frame that are different from the previously described alter-native human g2 peptide. Therefore, the mechanism for generating smaller message and the event of alter-native splicing are quite distinct between mouse and human Lamc2, although genomic organization is highly conserved. The significance of the presence of alternative message is discussed.

Keywords Alternative Splicing, Alternative Transcriptional

Article

Research Article

Mol. Cells 2001; 12(3): 380-390

Published online December 31, 2001

Copyright © The Korean Society for Molecular and Cellular Biology.

Alternative Transcriptional Initiation and Splicing of Mouse Lamc2 Message

Gwanghee Lee, Moon Gyo Kim, Jeong Bin Yim, Seung Hwan Hong

Abstract

To investigate the mechanism of two forms of messages (5.1 and 2.4 kb) in mouse Lamc2, a gene encoding for the g2 chain of epithelial cell?specific laminin 5, we analyzed approximately 40 kb of genomic DNA con-taining the sequences from the first intron to the 23rd exon to the 3?untranscribed region. With the 5?rapid amplification of cDNA end (RACE) and primer exten-sion technique using RNA from mouse kidney and thymic epithelial cells, we found that the smaller mes-sage starts at the 2895th base of the cDNA within the 19th exon. Upstream sequences of this alternative start site showed the promoter activity in the reporter assay with the secreted form of alkaline phosphatase (SEAP). We also identified a novel alternatively spliced exon (exon 19B) that includes two stop codons. These results revealed two possible additional open reading frame that are different from the previously described alter-native human g2 peptide. Therefore, the mechanism for generating smaller message and the event of alter-native splicing are quite distinct between mouse and human Lamc2, although genomic organization is highly conserved. The significance of the presence of alternative message is discussed.

Keywords: Alternative Splicing, Alternative Transcriptional

Mol. Cells
Nov 30, 2023 Vol.46 No.11, pp. 655~725
COVER PICTURE
Kim et al. (pp. 710-724) demonstrated that a pathogen-derived Ralstonia pseudosolanacearum type III effector RipL delays flowering time and enhances susceptibility to bacterial infection in Arabidopsis thaliana. Shown is the RipL-expressing Arabidopsis plant, which displays general dampening of the transcriptional program during pathogen infection, grown in long-day conditions.

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