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Mol. Cells 2008; 25(2): 272-278

Published online April 30, 2008

© The Korean Society for Molecular and Cellular Biology

Growth Retardation and Death of Rice Plants Irradiated with Carbon Ion Beams Is Preceded by Very Early Dose- and Time-dependent Gene Expression Changes

Randeep Rakwal, Shinzo Kimura, Junko Shibato, Kumie Nojima, Yeon-Ki Kim, Baek Hie Nahm, Nam-Soo Jwa, Satoru Endo, Kenichi Tanaka and Hitoshi Iwahashi

Abstract

The carbon-ion beam (CIB) generated by the heavy-ion medical accelerator in Chiba (HIMAC) was targeted to 7-day-old rice. Physiological parameters such as growth, and gene expression profiles were examined immediately after CIB irradiation. Dose-dependent growth suppression was seen three days post-irradiation (PI), and all the irradiated plants died by 15 days PI. Microarray (Agilent rice 22K) analysis of the plants immediately after irradiation (iai) revealed effects on gene expression at 270 Gy; 353 genes were up-regulated and 87 down-regulated. Exactly the same set of genes was affected at 90 Gy. Among the highly induced genes were genes involved in information storage and processing, cellular processes and signaling, and metabolism. RT-PCR analysis confirmed the microarray data.

Keywords DNA Microarray, Early Gene Expression, Radiation, Rice, Stress Response

Article

Communication

Mol. Cells 2008; 25(2): 272-278

Published online April 30, 2008

Copyright © The Korean Society for Molecular and Cellular Biology.

Growth Retardation and Death of Rice Plants Irradiated with Carbon Ion Beams Is Preceded by Very Early Dose- and Time-dependent Gene Expression Changes

Randeep Rakwal, Shinzo Kimura, Junko Shibato, Kumie Nojima, Yeon-Ki Kim, Baek Hie Nahm, Nam-Soo Jwa, Satoru Endo, Kenichi Tanaka and Hitoshi Iwahashi

Abstract

The carbon-ion beam (CIB) generated by the heavy-ion medical accelerator in Chiba (HIMAC) was targeted to 7-day-old rice. Physiological parameters such as growth, and gene expression profiles were examined immediately after CIB irradiation. Dose-dependent growth suppression was seen three days post-irradiation (PI), and all the irradiated plants died by 15 days PI. Microarray (Agilent rice 22K) analysis of the plants immediately after irradiation (iai) revealed effects on gene expression at 270 Gy; 353 genes were up-regulated and 87 down-regulated. Exactly the same set of genes was affected at 90 Gy. Among the highly induced genes were genes involved in information storage and processing, cellular processes and signaling, and metabolism. RT-PCR analysis confirmed the microarray data.

Keywords: DNA Microarray, Early Gene Expression, Radiation, Rice, Stress Response

Mol. Cells
Nov 30, 2023 Vol.46 No.11, pp. 655~725
COVER PICTURE
Kim et al. (pp. 710-724) demonstrated that a pathogen-derived Ralstonia pseudosolanacearum type III effector RipL delays flowering time and enhances susceptibility to bacterial infection in Arabidopsis thaliana. Shown is the RipL-expressing Arabidopsis plant, which displays general dampening of the transcriptional program during pathogen infection, grown in long-day conditions.

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