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Mol. Cells 2008; 25(3): 397-406

Published online January 1, 1970

© The Korean Society for Molecular and Cellular Biology

Kinetic Analysis of the MAPK and PI3K/Akt Signaling Pathways

Suresh Babu CV, Sheikh Md. Enayetul Babar, Eun Joo Song, Eulsik Oh and Young Sook Yoo

Abstract

Computational modeling of signal transduction is currently attracting much attention as it can promote the understanding of complex signal transduction mechanisms. Although several mathematical models have been used to examine signaling pathways, little attention has been given to crosstalk mechanisms. In this study, an attempt was made to develop a computational model for the pathways involving growth-factor-mediated mitogen-activated protein kinase (MAPK) and phosphatidylinositol 3'-kinase/protein kinase B (PI3K/Akt). In addition, the dynamics of the protein activities were analyzed based on a set of kinetic data. The simulation approach integrates the information on several levels and predicts systems behavior. The in-silico analysis conducted revealed that the Raf and Akt pathways act independently.

Keywords Biochemical Pathway, Computational Modeling, MAPK, PI3K/Akt, Signal Transduction, Systems Biology

Article

Research Article

Mol. Cells 2008; 25(3): 397-406

Published online May 31, 2008

Copyright © The Korean Society for Molecular and Cellular Biology.

Kinetic Analysis of the MAPK and PI3K/Akt Signaling Pathways

Suresh Babu CV, Sheikh Md. Enayetul Babar, Eun Joo Song, Eulsik Oh and Young Sook Yoo

Abstract

Computational modeling of signal transduction is currently attracting much attention as it can promote the understanding of complex signal transduction mechanisms. Although several mathematical models have been used to examine signaling pathways, little attention has been given to crosstalk mechanisms. In this study, an attempt was made to develop a computational model for the pathways involving growth-factor-mediated mitogen-activated protein kinase (MAPK) and phosphatidylinositol 3'-kinase/protein kinase B (PI3K/Akt). In addition, the dynamics of the protein activities were analyzed based on a set of kinetic data. The simulation approach integrates the information on several levels and predicts systems behavior. The in-silico analysis conducted revealed that the Raf and Akt pathways act independently.

Keywords: Biochemical Pathway, Computational Modeling, MAPK, PI3K/Akt, Signal Transduction, Systems Biology

Mol. Cells
Nov 30, 2023 Vol.46 No.11, pp. 655~725
COVER PICTURE
Kim et al. (pp. 710-724) demonstrated that a pathogen-derived Ralstonia pseudosolanacearum type III effector RipL delays flowering time and enhances susceptibility to bacterial infection in Arabidopsis thaliana. Shown is the RipL-expressing Arabidopsis plant, which displays general dampening of the transcriptional program during pathogen infection, grown in long-day conditions.

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