Molecules and Cells

Cited by CrossRef (61)

  1. Abinaya Manivannan, Sena Choi, Tae-Hwan Jun, Eun-Young Yang, Jin-Hee Kim, Eun-Su Lee, Hye-Eun Lee, Do-Sun Kim, Yul-Kyun Ahn, Gustavo Graciano Fonseca. Genotyping by Sequencing-Based Discovery of SNP Markers and Construction of Linkage Map from F5 Population of Pepper with Contrasting Powdery Mildew Resistance Trait. BioMed Research International 2021;2021:1
    https://doi.org/10.1155/2021/6673010
  2. Litang Lu, Hufang Chen, Xiaojing Wang, Yichen Zhao, Xinzhuan Yao, Biao Xiong, Yanli Deng, Degang Zhao. Genome-level diversification of eight ancient tea populations in the Guizhou and Yunnan regions identifies candidate genes for core agronomic traits. Hortic Res 2021;8
    https://doi.org/10.1038/s41438-021-00617-9
  3. Ibrahim Celik, Nergiz Gurbuz, Ali Tevfik Uncu, Anne Frary, Sami Doganlar. Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing. BMC Genomics 2017;18
    https://doi.org/10.1186/s12864-016-3406-7
  4. Ngan Thi Phan, Lan Thi Trinh, Mi-Young Rho, Tae-Sung Park, Ok-Rye Kim, Jun Zhao, Hyoung-Moon Kim, Sung-Chur Sim. Identification of loci associated with fruit traits using genome-wide single nucleotide polymorphisms in a core collection of tomato (Solanum lycopersicum L.). Scientia Horticulturae 2019;243:567
    https://doi.org/10.1016/j.scienta.2018.09.003
  5. Amdadul Huq, Shahina Akter, Ill Sup Nou, Hoy Taek Kim, Yu Jin Jung, Kwon Kyoo Kang. Identification of functional SNPs in genes and their effects on plant phenotypes. J Plant Biotechnol 2016;43:1
    https://doi.org/10.5010/JPB.2016.43.1.1
  6. Yul-Kyun Ahn, Abinaya Manivannan, Sandeep Karna, Tae-Hwan Jun, Eun-Young Yang, Sena Choi, Jin-Hee Kim, Do-Sun Kim, Eun-Su Lee. Whole Genome Resequencing of Capsicum baccatum and Capsicum annuum to Discover Single Nucleotide Polymorphism Related to Powdery Mildew Resistance. Sci Rep 2018;8
    https://doi.org/10.1038/s41598-018-23279-5
  7. Delin Xu, Hongbo Chen, Murat Aci, Yinchi Pan, Yanni Shangguan, Jie Ma, Lin Li, Gang Qian, Qianxing Wang, Zhong-Hua Chen. De Novo assembly, characterization and development of EST-SSRs from Bletilla striata transcriptomes profiled throughout the whole growing period. PLoS ONE 2018;13:e0205954
    https://doi.org/10.1371/journal.pone.0205954
  8. Jaihyunk Ryu, Jae Il Lyu, Dong-Gun Kim, Kwang Min Koo, Baul Yang, Yeong Deuk Jo, Sang Hoon Kim, Soon-Jae Kwon, Bo-Keun Ha, Si-Yong Kang, Jin-Baek Kim, Joon-Woo Ahn. Single Nucleotide Polymorphism (SNP) Discovery and Association Study of Flowering Times, Crude Fat and Fatty Acid Composition in Rapeseed (Brassica napus L.) Mutant Lines Using Genotyping-by-Sequencing (GBS). Agronomy 2021;11:508
    https://doi.org/10.3390/agronomy11030508
  9. H. Han, Y. Oh, K. Kim, S. Oh, S. Cho, Y. Kim, Y.K. Kim, D. Kim. Development of insertion and deletion markers associated with pollen fertility in pears (Pyrus spp.). Acta Hortic. 2021:193
    https://doi.org/10.17660/ActaHortic.2021.1307.30
  10. Marinus J. M. Smulders, Paul Arens. Ornamental Crops. 2021.
    https://doi.org/10.1007/978-3-319-90698-0_9
  11. Guangjun Guo, Genlian Zhang, Baogui Pan, Weiping Diao, Jinbing Liu, Wei Ge, Changzhou Gao, Yong Zhang, Cheng Jiang, Shubin Wang. Development and Application of InDel Markers for Capsicum spp. Based on Whole-Genome Re-Sequencing. Sci Rep 2019;9
    https://doi.org/10.1038/s41598-019-40244-y
  12. Jiheun Noh, Yun Su Do, Gi Hoon Kim, Cheol Choi. A genome-wide association study for the detection of genes related to apple Marssonina Blotch disease resistance in apples. Scientia Horticulturae 2020;262:108986
    https://doi.org/10.1016/j.scienta.2019.108986
  13. Sang Woo Lee, Yu-Jeong Kwon, Inwoo Baek, Hong-Il Choi, Joon-Woo Ahn, Jin-Baek Kim, Si-Yong Kang, Sang Hoon Kim, Yeong Deuk Jo. Mutagenic Effect of Proton Beams Characterized by Phenotypic Analysis and Whole Genome Sequencing in Arabidopsis. Front. Plant Sci. 2021;12
    https://doi.org/10.3389/fpls.2021.752108
  14. Yul-Kyun Ahn, Sandeep Karna, Tae-Hwan Jun, Eun-Young Yang, Hye-Eun Lee, Jin-Hee Kim, Jeong-Ho Kim. Complete genome sequencing and analysis of Capsicum annuum varieties. Mol Breeding 2016;36
    https://doi.org/10.1007/s11032-016-0557-9
  15. Yeon Jung Park, Mi Nan Lee, Jae Koo Noh, Eun Soo Noh, Jung Ha Kang, Jung Youn Park, Eun Mi Kim, Joshua B. Gross. Classification of Takifugu rubripes, T. chinensis and T. pseudommus by genotyping-by-sequencing. PLoS ONE 2020;15:e0236483
    https://doi.org/10.1371/journal.pone.0236483
  16. Kidong Hwang, Sewon Oh, Keumsun Kim, Hyeondae Han, Youngjae Oh, Hyeonkyu Lim, Yoon-Kyeong Kim, Daeil Kim. Genotyping-by-sequencing approaches using optimized two-enzyme combinations in Asian pears (Pyrus spp.). Mol Breeding 2019;39
    https://doi.org/10.1007/s11032-019-1071-7
  17. . De Novo Transcriptome Analysis of Cucumis melo L. var. makuwa. 2016;39:141
    https://doi.org/10.14348/molcells.2016.2264
  18. Joon Ki Hong, Eun Jung Suh, Sang Ryeol Park, Jihee Park, Yeon-Hee Lee. Multiplex CRISPR/Cas9 Mutagenesis of BrVRN1 Delays Flowering Time in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). Agriculture 2021;11:1286
    https://doi.org/10.3390/agriculture11121286
  19. Verena Labenski, Julia D. Suerth, Elke Barczak, Dirk Heckl, Camille Levy, Ornellie Bernadin, Emmanuelle Charpentier, David A. Williams, Boris Fehse, Els Verhoeyen, Axel Schambach. Alpharetroviral self-inactivating vectors produced by a superinfection-resistant stable packaging cell line allow genetic modification of primary human T lymphocytes. Biomaterials 2016;97:97
    https://doi.org/10.1016/j.biomaterials.2016.04.019
  20. Kang Hee Kho, Zahid Parvez Sukhan, Shaharior Hossen, Yusin Cho, Soo Cheol Kim, Md. Rajib Sharker, Hee-Jeong Jung, Ill-Sup Nou. Construction of a Genetic Linkage Map Based on SNP Markers, QTL Mapping and Detection of Candidate Genes of Growth-Related Traits in Pacific Abalone Using Genotyping-by-Sequencing. Front. Mar. Sci. 2021;8
    https://doi.org/10.3389/fmars.2021.713783
  21. Chang-Ho Eun, In-Jung Kim. Genome-wide DNA polymorphisms of Citrus unshiu Marc. cv. Miyagawa-wase cultivated in different regions based on whole-genome re-sequencing. Plant Biotechnol Rep 2021;15:551
    https://doi.org/10.1007/s11816-021-00696-z
  22. Soo-Young Chae, Kwanuk Lee, Jae-Wahng Do, Sun-Cheul Hong, Kang-Hyun Lee, Myeong-Cheoul Cho, Eun-Young Yang, Jae-Bok Yoon. QTL Mapping of Resistance to Bacterial Wilt in Pepper Plants (Capsicum annuum) Using Genotyping-by-Sequencing (GBS). Horticulturae 2022;8:115
    https://doi.org/10.3390/horticulturae8020115
  23. Jaihyunk Ryu, Woon Ji Kim, Sang Hun Kim, Kang-Seop Lee, Han-Jig Jo, Ee-Youb Kim, Sang Hoon Kim, Si-Yong Kang, Jeong-Hee Lee, Bo-Keun Ha. Characterization of genetic variation and antioxidant properties in strawberry (Fragaria × ananassa Duch.) mutant genotypes. Genet Resour Crop Evol 2020;67:1457
    https://doi.org/10.1007/s10722-020-00918-3
  24. Seong Beom Jin, Ho Bang Kim, SukMan Park, Min Ju Kim, Cheol Woo Choi, Su-Hyun Yun. Identification of the ‘Haryejosaeng’ mandarin cultivar by multiplex PCR-based SNP genotyping. Mol Biol Rep 2020;47:8385
    https://doi.org/10.1007/s11033-020-05850-4
  25. Weilun Liu, Zongwei Qian, Jian Zhang, Jingjing Yang, Mingsheng Wu, Lorenzo Barchi, Haiyan Zhao, Honghe Sun, Yanling Cui, Changlong Wen. Impact of fruit shape selection on genetic structure and diversity uncovered from genome-wide perfect SNPs genotyping in eggplant. Mol Breeding 2019;39
    https://doi.org/10.1007/s11032-019-1051-y
  26. Won-Sub Shin, Bongsoo Lee, Nam Kyu Kang, Young-Uk Kim, Won-Joong Jeong, Jong-Hee Kwon, Byeong-ryool Jeong, Yong Keun Chang. Complementation of a mutation in CpSRP43 causing partial truncation of light-harvesting chlorophyll antenna in Chlorella vulgaris. Sci Rep 2017;7
    https://doi.org/10.1038/s41598-017-18221-0
  27. Lina Bu, Qi Wang, Wenjin Gu, Ruifei Yang, Di Zhu, Zhuo Song, Xiaojun Liu, Yiqiang Zhao. Improving read alignment through the generation of alternative reference via iterative strategy. Sci Rep 2020;10
    https://doi.org/10.1038/s41598-020-74526-7
  28. Doie Park, Geleta Dugassa Barka, Eun-Young Yang, Myeong-Cheoul Cho, Jae Bok Yoon, Jundae Lee. Identification of QTLs Controlling α-Glucosidase Inhibitory Activity in Pepper (Capsicum annuum L.) Leaf and Fruit Using Genotyping-by-Sequencing Analysis. Genes 2020;11:1116
    https://doi.org/10.3390/genes11101116
  29. Jaihyunk Ryu, Woon Ji Kim, Juhyun Im, Kyung-Won Kang, Sang Hoon Kim, Yeong Deuk Jo, Si-Yong Kang, Jeong-Hee Lee, Bo-Keun Ha. Single nucleotide polymorphism (SNP) discovery through genotyping-by-sequencing (GBS) and genetic characterization of Dendrobium mutants and cultivars. Scientia Horticulturae 2019;244:225
    https://doi.org/10.1016/j.scienta.2018.09.053
  30. Woon Ji Kim, Jaihyunk Ryu, Juhyun Im, Sang Hun Kim, Si-Yong Kang, Jeong-Hee Lee, Sung-Hwan Jo, Bo-Keun Ha. Molecular characterization of proton beam-induced mutations in soybean using genotyping-by-sequencing. Mol Genet Genomics 2018;293:1169
    https://doi.org/10.1007/s00438-018-1448-z
  31. Ye Rin Lee, Jinhee Kim, Sun Yi Lee, Jundae Lee. Diallelic SNP marker development and genetic linkage map construction in octoploid strawberry (Fragaria × ananassa) through next-generation resequencing and high-resolution melting analysis. Hortic. Environ. Biotechnol. 2020;61:371
    https://doi.org/10.1007/s13580-019-00223-8
  32. Junkyoung Choe, Ji-Eun Kim, Bong-Woo Lee, Jeong Hee Lee, Moon Nam, Youn-Il Park, Sung-Hwan Jo. A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae. 2018;2018
    https://doi.org/10.1093/database/bay047
  33. Sally McTaggart, Mohamed Al-Rubeai. Retroviral vectors for human gene delivery. Biotechnology Advances 2002;20:1
    https://doi.org/10.1016/S0734-9750(01)00087-8
  34. Yun-Joo Kang, Bo-Mi Lee, Moon Nam, Ki-Won Oh, Myoung-Hee Lee, Tae-Ho Kim, Sung-Hwan Jo, Jeong-Hee Lee. Identification of quantitative trait loci associated with flowering time in perilla using genotyping-by-sequencing. Mol Biol Rep 2019;46:4397
    https://doi.org/10.1007/s11033-019-04894-5
  35. Jaihyunk Ryu, Woon Ji Kim, Juhyun Im, Sang Hun Kim, Kang-Seop Lee, Han-Jig Jo, Ee-Youb Kim, Si-Yong Kang, Jeong-Hee Lee, Bo-Keun Ha. Genotyping-by-sequencing based single nucleotide polymorphisms enabled Kompetitive Allele Specific PCR marker development in mutant Rubus genotypes. Electronic Journal of Biotechnology 2018;35:57
    https://doi.org/10.1016/j.ejbt.2018.08.001
  36. Boyoung Kim, In Sun Hwang, Hyung Jin Lee, Je Min Lee, Eunyoung Seo, Doil Choi, Chang-Sik Oh. Identification of a molecular marker tightly linked to bacterial wilt resistance in tomato by genome-wide SNP analysis. Theor Appl Genet 2018;131:1017
    https://doi.org/10.1007/s00122-018-3054-1
  37. Kyeong Bok Ma, Sang-Jin Yang, Ye-Seul Jo, Sam Seok Kang, Moon Nam. Development of Kompetitive Allele Specific PCR markers for identification of persimmon varieties using genotyping-by-sequencing. Electronic Journal of Biotechnology 2021;49:72
    https://doi.org/10.1016/j.ejbt.2020.11.003
  38. Jinhee Kim, Suhyoung Park, Junho Lee, Koeun Han, Yoonah Jang, Wonbyoung Chae. A Preliminary Study for Identifying Quantitative Trait Loci Associated with Seed Production in Radish Using Genotyping-by-Sequencing. Horticulturae 2022;8:268
    https://doi.org/10.3390/horticulturae8030268
  39. Vera Vendramin, Danara Ormanbekova, Simone Scalabrin, Davide Scaglione, Marco Maccaferri, Pierluigi Martelli, Silvio Salvi, Irena Jurman, Rita Casadio, Federica Cattonaro, Roberto Tuberosa, Andrea Massi, Michele Morgante. Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm. BMC Genomics 2019;20
    https://doi.org/10.1186/s12864-019-5645-x
  40. A.W.S. Chan, K.Y. Chong, G. Schatten. Transgenic Animal Technology. 2019.
    https://doi.org/10.1016/B978-0-08-057480-6.50018-6
  41. Evangelos V. Badiavas, Linda Zhou, Vincent Falanga. Growth inhibition of primary keratinocytes following transduction with a novel TGFβ-1 containing retrovirus. Journal of Dermatological Science 2001;27:1
    https://doi.org/10.1016/S0923-1811(01)00091-3
  42. Youn-Lee Oh, In-Geol Choi, Kab-Yeul Jang, Min-Seek Kim, Min ji Oh, Ji-Hoon Im. SNP-Based Genetic Linkage Map and Quantitative Trait Locus Mapping Associated with the Agronomically Important Traits of Hypsizygus marmoreus. Mycobiology 2021;49:589
    https://doi.org/10.1080/12298093.2021.2018784
  43. Nayoung Ro, Mesfin Haile, Onsook Hur, Bora Geum, Juhee Rhee, Aejin Hwang, Bitsam Kim, Jeaeun Lee, Bum-Soo Hahn, Jundae Lee, Byoung-Cheorl Kang. Genome-Wide Association Study of Resistance to Phytophthora capsici in the Pepper (Capsicum spp.) Collection. Front. Plant Sci. 2022;13
    https://doi.org/10.3389/fpls.2022.902464
  44. So Jin Lee, Seung Hyun Ban, Gi Hoon Kim, Soon Il Kwon, Jeong Hee Kim, Cheol Choi, H. Flachowsky. Identification of potential gene-associated major traits using GBS-GWAS for Korean apple germplasm collections. Plant Breed 2017;136:977
    https://doi.org/10.1111/pbr.12544
  45. Zoltan Kevei, Silva Demetryus Silva Ferreira, Cristina Maria Perez Casenave, Tomasz Kurowski, Fady Mohareb, Daniel Rickett, Chris Stain, Andrew J. Thompson. Missense mutation of a class B heat shock factor is responsible for the tomato bushy root-2 phenotype. Mol Horticulture 2022;2
    https://doi.org/10.1186/s43897-022-00025-0
  46. Saleh Alseekh, Leonardo Perez de Souza, Maria Benina, Alisdair R. Fernie. The style and substance of plant flavonoid decoration; towards defining both structure and function. Phytochemistry 2020;174:112347
    https://doi.org/10.1016/j.phytochem.2020.112347
  47. Hye-ri Jeong, Bo-Mi Lee, Bong-Woo Lee, Jae-Eun Oh, Jeong-Hee Lee, Ji-Eun Kim, Sung-Hwan Jo. Tag-SNP selection and online database construction for haplotype-based marker development in tomato. J Plant Biotechnol 2020;47:218
    https://doi.org/10.5010/JPB.2020.47.3.218
  48. Daria Scarano, Rosa Rao, Giandomenico Corrado, Zhong-Hua Chen. In Silico identification and annotation of non-coding RNAs by RNA-seq and De Novo assembly of the transcriptome of Tomato Fruits. PLoS ONE 2017;12:e0171504
    https://doi.org/10.1371/journal.pone.0171504
  49. Yiqian Fu, G. Danny Esselink, Richard G. F. Visser, Jaap M. van Tuyl, Paul Arens. Transcriptome Analysis of Gerbera hybrida Including in silico Confirmation of Defense Genes Found. Front. Plant Sci. 2016;7
    https://doi.org/10.3389/fpls.2016.00247
  50. Ye-Rin Lee, Cheol Woo Kim, JiWon Han, Hyun Jin Choi, Koeun Han, Eun Su Lee, Do-Sun Kim, Jundae Lee, Muhammad Irfan Siddique, Hye-Eun Lee. Genotyping-by-Sequencing Derived Genetic Linkage Map and Quantitative Trait Loci for Sugar Content in Onion (Allium cepa L.). Plants 2021;10:2267
    https://doi.org/10.3390/plants10112267
  51. . Genome-wide Single Nucleotide Polymorphism-based Assay for Phylogenetic Relationship of the Flammulina velutipes. Kor. J. Mycol. 2015;43
    https://doi.org/10.4489/KJM.2015.43.4.231
  52. Zhe Cao, Zhanao Deng. De Novo Assembly, Annotation, and Characterization of Root Transcriptomes of Three Caladium Cultivars with a Focus on Necrotrophic Pathogen Resistance/Defense-Related Genes. IJMS 2017;18:712
    https://doi.org/10.3390/ijms18040712
  53. Sagar Patel, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Erliang Zeng, Anne Y. Fennell. Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly. BMC Genomics 2018;19
    https://doi.org/10.1186/s12864-018-4434-2
  54. Hyun A. Jang, May Moe Oo, Dae-Gyu Kim, Ha-Yeon Yoon, Mi-Reu Kim, Kyo-Sang Lee, Khaing Shwe Zin Thinn, Saima Arif, Jia Guo Geng, Jiyoung Min, Dong Jun Lim, Youn Young Hur, Sang-Keun Oh. CC-NBS-LRR, a set of VvCRP markers, can distinguish cultivars with ripe rot resistance to Colletotrichum pathogens in grapevine. Hortic. Environ. Biotechnol. 2020;61:915
    https://doi.org/10.1007/s13580-020-00290-2
  55. Claudia Muñoz-Espinoza, Alex Di Genova, Alicia Sánchez, José Correa, Alonso Espinoza, Claudio Meneses, Alejandro Maass, Ariel Orellana, Patricio Hinrichsen. Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches. BMC Plant Biol 2020;20
    https://doi.org/10.1186/s12870-020-02564-4
  56. Siyoung Lee, Girim Park, Yunseo Choi, Seoyeon Park, Hoytaek Kim, Oakjin Lee, Taebok Kim, Younghoon Park. Whole-Genome Resequencing of Near-Isogenic Lines Reveals a Genomic Region Associated with High Trans-Lycopene Contents in Watermelon. Plants 2021;11:8
    https://doi.org/10.3390/plants11010008
  57. Seung Hyun Ban, Cheol Choi. Development of an Apple F1Segregating Population Genetic Linkage Map Using Genotyping-By-Sequencing. Plant Breed. Biotech. 2018;6:434
    https://doi.org/10.9787/PBB.2018.6.4.434
  58. Xing Wu, Christopher Heffelfinger, Hongyu Zhao, Stephen L. Dellaporta. Benchmarking variant identification tools for plant diversity discovery. BMC Genomics 2019;20
    https://doi.org/10.1186/s12864-019-6057-7
  59. Min Ho Eun, Jung-Heon Han, Jae Bok Yoon, Jundae Lee. QTL mapping of resistance to the Cucumber mosaic virus P1 strain in pepper using a genotyping-by-sequencing analysis. Hortic. Environ. Biotechnol. 2016;57:589
    https://doi.org/10.1007/s13580-016-0128-3
  60. Priyanka Priyadarshini, Chinmoy Mishra, Siddharth Sankar Sabat, Manaswini Mandal, Tushar Jyotiranjan, Lipilekha Swain, Madhumita Sahoo. Computational analysis of non-synonymous SNPs in bovine Mx1 gene. Gene Reports 2018;11:294
    https://doi.org/10.1016/j.genrep.2018.05.001
  61. Sovetgul Asekova, Eunyoung Oh, Krishnanand P. Kulkarni, Muhammad Irfan Siddique, Myoung Hee Lee, Jung In Kim, Jeong-Dong Lee, Minsu Kim, Ki-Won Oh, Tae-Joung Ha, Sung-Up Kim, Kwang-Soo Cho. An Integrated Approach of QTL Mapping and Genome-Wide Association Analysis Identifies Candidate Genes for Phytophthora Blight Resistance in Sesame (Sesamum indicum L.). Front. Plant Sci. 2021;12
    https://doi.org/10.3389/fpls.2021.604709