Cell-Based Screen Using Amyloid Mimic β23 Expression Identifies Peucedanocoumarin III as a Novel Inhibitor of α-Synuclein and Huntingtin Aggregates
Sangwoo Ham, Hyojung Kim, Seojin Hwang, Hyunook Kang, Seung Pil Yun, Sangjune Kim, Donghoon Kim, Hyun Sook Kwon, Yun-Song Lee, MyoungLae Cho, Heung-Mook Shin, Heejung Choi, Ka Young Chung, Han Seok Ko, Gum Hwa Lee, and Yunjong Lee
Abstract
Aggregates of disease-causing proteins dysregulate cellular functions, thereby causing neuronal cell loss in diverse neurodegenerative diseases. Although many in vitro or in vivo studies of protein aggregate inhibitors have been performed, a therapeutic strategy to control aggregate toxicity has not been earnestly pursued, partly due to the limitations of available aggregate models. In this study, we established a tetracycline (Tet)-inducible nuclear aggregate (β23) expression model to screen potential lead compounds inhibiting β23-induced toxicity. High-throughput screening identified several natural compounds as nuclear β23 inhibitors, including peucedanocoumarin III (PCIII). Interestingly, PCIII accelerates disaggregation and proteasomal clearance of both nuclear and cytosolic β23 aggregates and protects SH-SY5Y cells from toxicity induced by β23 expression. Of translational relevance, PCIII disassembled fibrils and enhanced clearance of cytosolic and nuclear protein aggregates in cellular models of huntingtin and α-synuclein aggregation. Moreover, cellular toxicity was diminished with PCIII treatment for polyglutamine (PolyQ)-huntingtin expression and α-synuclein expression in conjunction with 6-hydroxydopamine (6-OHDA) treatment. Importantly, PCIII not only inhibited α-synuclein aggregation but also disaggregated preformed α-synuclein fibrils in vitro. Taken together, our results suggest that a Tet-Off β23 cell model could serve as a robust platform for screening effective lead compounds inhibiting nuclear or cytosolic protein aggregates. Brain-permeable PCIII or its derivatives could be beneficial for eliminating established protein aggregates.
INTRODUCTION
Dysregulation of intracellular protein homeostasis is associated with diverse neurodegenerative diseases (Ross and Poirier, 2004). The aggregation of disease-related proteins (i.e., α-synuclein, polyglutamine (polyQ) repeat expansion-containing huntingtin, TAR DNA-binding protein [TDP43]) can be increased by disease-linked mutations or environmental stresses, thereby affecting the viability of neuronal subtypes in many brain disorders (Brahmachari et al., 2016; Gorbatyuk et al., 2008; Landles and Bates, 2004; Mahul-Mellier et al., 2014; Scherzinger et al., 1997; Scotter et al., 2015; Spillantini and Goedert, 2000). Interestingly, amyloid-like aggregates of disease proteins, including α-synuclein, huntingtin, and TDP43, are localized in the cytoplasm and nucleus (Goers et al., 2003; Kontopoulos et al., 2006; Rousseaux et al., 2016; Scherzinger et al., 1997; Scotter et al., 2014; Wyttenbach et al., 2000), which suggests differential proteinopathic disruption of cellular functions. A recent study showed that cytoplasmic protein aggregates impair nucleo-cytoplasmic protein transport (Woerner et al., 2016), thereby causing robust cellular toxicity. Moreover, pathological nuclear α-synuclein (Goers et al., 2003; Kontopoulos et al., 2006; Rousseaux et al., 2016) and huntingtin (Cui et al., 2006) have been reported to alter gene transcription. Since both cytosolic and nuclear protein aggregates have detrimental effects on cellular function and viability, a therapeutic strategy to control aggregates in both compartments may be important for controlling pathological processes in neurodegenerative diseases, including Parkinson’s disease (PD).
α-Synuclein is a major component of Lewy body inclusions in PD and other α-synucleinopathies (Norris et al., 2004; Spillantini and Goedert, 2000). Recently, pathologies of diseases related to α-synuclein oligomers or fibrils have been shown to propagate via neuron-to-neuron transmission (Luk et al., 2012; Mao et al., 2016). Several natural compounds have been identified and found to inhibit α-synuclein aggregation or convert toxic oligomer or fibril conformations into nontoxic species (Jha et al., 2016; Masuda et al., 2006; Singh et al., 2013). In most cases, in vitro α-synuclein incubation is used to monitor α-synuclein aggregation and screen potential inhibitors of α-synuclein toxicity. Indeed, thioflavin T-assisted assessments of amyloid formations have aided the identification of several compounds as α-synuclein inhibitors (e.g., Congo red and curcumin) (Masuda et al., 2006). Although this in vitro screening platform afforded investigation of a small number of compounds and their derivatives, it is low throughput and labor intensive, which hinders screening of large-scale compound libraries. Another weakness of this in vitro approach is that hit compounds may not have cell-protective functions or may have undesired toxicity profiles.
In this study, we established a tetracycline (Tet)-Off cell model expressing nuclear β-sheet amyloid aggregates (nuclear β23, as named in previous studies [Olzscha et al., 2011; Woerner et al., 2016]). β23 was initially developed to aid in the investigation molecular mechanisms of toxicity induced by disease-associated amyloid aggregates (Olzscha et al., 2011). β23 is an artificial protein designed to self-assemble into fibrils with repeated β strands of alternating patterns of polar and nonpolar residues (Olzscha et al., 2011). In the previous study, amyloid aggregate expression of β23 aided in the investigation of sequestration and dysregulation of functionally important endogenous proteins as molecular mechanisms of amyloid-induced cell toxicity (Olzscha et al., 2011). Using Tet-inducible expression and cellular toxicity as readouts, we identified several nuclear β23 inhibitors, including peucedanocoumarin III (PCIII). PCIII enhanced clearance of nuclear, as well as cytosolic, β23 aggregates and prevented the aggregation and toxicity of disease-related proteins (i.e., mutant huntingtin and α-synuclein). Significantly, in vitro analysis suggested that by facilitating disintegration of established pathological preformed fibrils (PFFs), PCIII could reverse toxicity mediated by intracellular protein inclusion.
MATERIALS AND METHODS
Chemicals and antibodies
The National Development Institute of Korean Medicine (NIKOM) provided the natural compound library, which contained 640 natural compounds of > 80% purity (1 mg/ml). This library was used for nuclear β23 inhibitor high-throughput screening. Natural compounds blocking β23 toxicity (i.e., PCIII, kaempferol-7-O-α-L-rhamnopyranoside, oregonin, and ophiocarpine) were extracted from herbal medications, purified, and validated using high-performance liquid chromatography (HPLC). Thioflavin S, Thioflavin T, 6-OHDA, doxycycline, Alamar blue, trypan blue, MG132, and carbobenzoxy-valyl-alanyl-aspartyl-[O-methyl]-fluoromethylketone (Z-VAD-FMK) were purchased from Sigma (USA). Doxorubicin was purchased from Selleck Chemicals. The primary antibodies used in this study were mouse antibody to hemagglutinin (HA) (12CA5, 1:1,000; Roche, Switzerland), mouse antibody to FLAG (M2, 1:5,000; Sigma), mouse antibody to α-synuclein (1:3,000; BD Transduction Laboratories, USA), rabbit antibody to green fluorescent protein (GFP) (cat# 2956, 1:5,000; Cell Signaling Technology, USA) mouse antibody to glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (GT239, 1:5,000; GeneTex, USA), mouse antibody to poly (ADP-ribose) polymerase 1 (PARP1) (cat# 556494, 1:1,000; BD Bioscience, USA), conformation specific rabbit antibody to α-synuclein filaments (MJFR-14-6-4-2, cat# ab209538, 1:5,000; Abcam, USA) and horseradish peroxidase (HRP)-conjugated mouse antibody to β-actin (AC15; Sigma-Aldrich, USA). The secondary antibodies used were HRP-conjugated sheep antibody to mouse immunoglobulin G (IgG) (cat# RPN4301, 1:5,000; GE Healthcare, USA), HRP-conjugated donkey antibody to rabbit IgG (cat# RPN4101, 1:5,000; GE Healthcare), Alexa Fluor 488-conjugated donkey antibody to mouse IgG (H + L) (cat# A21202, 1:1,000; Invitrogen, USA), Alexa Fluor 568-conjugated donkey antibody to mouse IgG (cat# A10037, 1:1,000; Invitrogen), and Alexa Fluor 647-conjugated donkey antibody to mouse IgG (cat# A31571, 1:1,000; Invitrogen).
Plasmids
The double-strand oligos encoding nuclear β23, β23, and nuclear αS824 sequence were cloned into a pTRE-Dual2 plasmid (Clontech Laboratories, USA). The full sequence of nuclear β23 with tags (NLS-FLAG-β23-HA) is as follows:
ATGCCAAAGAAGAAGCGGAAGGTCGGTTGCGACTACAAGGACGACGACGACAAGGGCATGCAGATCTCCATGGACTACAACATCCAGTTCCACAACAACGGCAACGAGATCCAGTTCGAGATCGACGACTCCGGCGGCGACATCGAGATCGAGATCCGGGGCCCCGGCGGCCGGGTGCACATCCAGCTGAACGACGGCCACGGCCACATCAAGGTGGACTTCAACAACGACGGCGGCGAGCTGCAGATCGACATGCACTACCCATACGACGTCCCAGACTACGCT.
The full DNA and amino acid sequence of β23 with tags (FLAG-β23-HA) is as follows:
ATGTGCGACTACAAGGACGACGACGACAAGGGCATGCAGATCTCCATGGACTACAACATCCAGTTCCACAACAACGGCAACGAGATCCAGTTCGAGATCGACGACTCCGGCGGCGACATCGAGATCGAGATCCGGGGCCCCGGCGGCCGGGTGCACATCCAGCTGAACGACGGCCACGGCCACATCAAGGTGGACTTCAACAACGACGGCGGCGAGCTGCAGATCGACATGCACTACCCATACGACGTCCCAGACTACGCTTAA;
MCDYKDDDDKGMQISMDYNIQFHNNGNEIQFEIDDSGGDIEIEIRGPGGRVHIQLNDGHGHIKVDFNNDGGELQIDMHYPYDVPDYA.
The full DNA and amino acid sequence of nuclear αS824 with tags (NLS-FLAG-αS824 -HA) is as follows:
ATGCCAAAGAAGAAGCGGAAGGTCGGTTGCGACTACAAGGACGACGACGACAAGGGCATGTACGGCAAGCTGAACGACCTGCTGGAGGACCTGCAGGAGGTGCTGAAGCACGTGAACCAGCACTGGCAGGGCGGCCAGAAGAACATGAACAAGGTGGACCACCACCTGCAGAACGTGATCGAGGACATCCACGACTTCATGCAGGGCGGCGGCTCCGGCGGCAAGCTGCAGGAGATGATGAAGGAGTTCCAGCAGGTGCTGGACGAGATCAAGCAGCAGCTGCAGGGCGGCGACAACTCCCTGCACAACGTGCACGAGAACATCAAGGAGATCTTCCACCACCTGGAGGAGCTGGTGCACCGGTACCCATACGACGTCCCAGACTACGCTTGA;
MPKKKRKVGCDYKDDDDKGMYGKLNDLLEDLQEVLKHVNQHWQGGQKNMNKVDHHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDEIKQQLQGGDNSLHNVHENIKEIFHHLEELVHRYPYDVPDYA.
Construct integrity was verified by sequencing. Plasmid cytomegalovirus (pCMV)-tetracycline transactivator (tTA)was purchased from Clontech and the pTreTight-Htt94Q-CFP (Maynard et al., 2009) construct was purchased from Addgene in USA (Plasmid #23966). The HA-α-synuclein construct was generated as previously described (Brahmachari et al., 2016).
Purification of PCIII from A. decursiva
In March 2013, A. decursiva roots were purchased from a drug store in Gyeongsan, Gyeongbuk, Korea. The roots (8.0 kg) were extracted with 100% methanol (MeOH, 3 × 10 L) at room temperature. The extract (674.0 g) was evaporated using a vacuum rotary evaporator, and then suspended in H2O (2 L) and solvent partitioned with dichloromethane (CH2Cl2, 2 L) and butanol (2 L). The CH2Cl2 fraction (212.0 g) was subjected to open column chromatography over silica gel (n-Hexane, ethyl-acetate from 1:0 to 0:1), which produced eleven fractions (A-K). Fraction E (10.1 g) was recrystallized from MeOH to yield solid PCIII (1.2 g).
HPLC-ELSD and NMR of PCIII
HPLC analysis was performed on an Agilent 1260 system, equipped with an evaporative light-scattering detector (ELSD) and a Kinetex C18 column (4.6 × 150 mm; Phenomenex, USA). The mobile phase consisted of 0.1% trifluoroacetic acid in water (v/v) (A) and acetonitrile (B). The injection volume was 3 μl and flow rate was kept at 0.5 ml/min for a total run time of 30 min. The gradient program was as follows: 2% (start, B), 5% (0–3 min, B), 100% (3–20 min, B), 2% (20–23 min, B), and kept at 2% (B) until the end of the run at 30 min. HPLC analysis found PCIII purity to be 99.9% (Fig. 1).

1H and 13C NMR spectra were recorded on a Jeol ECA-500 MHz NMR instrument, operating at 500 MHz for 1H NMR and 125 MHz for 13C NMR (JEOL, Japan) with tetramethylsilane as the internal standard. The PCIII structure observed was compared with that reported in previous literature (Chen et al., 1996; Takata et al., 1990).
PCIII: colorless needles; ESI-MS m/z 386; 1H-NMR (CDCl3, 500 MHz) δ 7.61 (1H, d, J = 9.5 Hz, H-4), 7.39 (1H, d, J = 8.6 Hz, H-5), 6.84 (1H, d, J = 8.6 Hz, H-6), 6.78 (1H, d, J = 7.0 Hz, H-3″), 6.24 (1H, d, J = 9.5 Hz, H-3), 6.23 (1H, d, J = 3.4 Hz, H-4′), 5.33 (1H, d, J = 3.4 Hz, H-3′), 2.09 (3H, s, OCOCH3), 1.84 (3H, s, H-5″), 1.76 (3H, d, J = 7.0 Hz, H-4″), 1.47 (3H, s, C-2″-CH3), 1.39 (3H, s, C-2′-CH3); 13C-NMR (CDCl3, 125 MHz) δ 169.3 (C-1‴), 166.3 (C-1″), 160.0 (C-2), 156.4 (C-7), 154.1 (C-9), 143.4 (C-4), 138.1 (C-3″), 129.1 (C-5), 127.9 (C-2″), 114.4 (C-6), 113.0 (C-3), 112.4 (C-10), 106.3 (C-8), 77.2 (C-2′), 71.1 (C-3′), 63.2 (C-4′), 23.7 (C-2′-CH3), 23.5 (C-2′-CH3), 20.5 (C-2‴), 14.3 (C-4″), 12.0 (C-5″)
Cell culture, transfection, and treatment
Human neuroblastoma SH-SY5Y cells (ATCC [American Type Culture Collection], USA) or HEK-293T cells were grown in DMEM containing 10% fetal bovine serum (FBS) (vol/vol) and antibiotics in a humidified 5% CO2 atmosphere at 37°C. X-tremeGENE HP transfection reagent (Roche) was used for transient transfections according to the manufacturer’s instructions. For α-synuclein PFF uptake experiments, SH-SY5Y cells were incubated for 4 days in complete media containing PFF (5 μg/ml). PFF was replaced every 2 days. SH-SY5Y cells were briefly washed with phosphate-buffered saline (PBS) and incubated in the presence of natural compounds for an indicated duration followed by western blot analysis of remnant PFF in cell lysates.
Subcellular fractionation
SH-SY5Y cells were fractionated into cytosol and nucleus fractions using the Qproteome Mitochondria Isolation Kit (Qiagen, Germany) according to manual instructions. Cytosolic fractions were further concentrated with acetone precipitation. The purity of each fraction was validated with western blots using antibodies to marker proteins for cytosolic (GAPDH, 2% of total cytosolic fraction) and nuclear (PARP1, 5% of total nuclear fraction) fractions.
Alamar blue-based high-throughput cell viability assay
As outlined in Figure 2C, HEK-293T cells were cotransfected with pCMV-tTA and TetP-nuclear β23 constructs. Cells were kept on doxycycline (200 ng/ml; Sigma)-containing complete media to prevent toxic expression of nuclear β23. After 2 days, transfected HEK-293T cells were plated onto 96-well white flat-bottom plates (Microtiter; Thermo Scientific, USA) at 80% confluency in 100 μl of DMEM containing 10% FBS with penicillin/streptomycin (P/S) and without doxycycline for nuclear β23 induction. After 24 h, each compound (i.e., 640 natural compounds extracted and purified by NIKOM; 0.35 μg/ml each) was added to a well. For homogeneous treatment of each compound, 50 μl of culture media were removed and 50 μl of 2X compound in complete media were then added to each well. After 48 h incubation, cell viability was measured using Alamar blue assay. Briefly, 10 μl of filtered Alamar blue solution (1 mg/ml resazurin in DW filtered through a 0.22 μM pore filter) was added to the 100 μl culture media in 96-well plates. Cell viability was determined by fluorescence reading using a microplate fluorescence spectrometer (excitation: 530 nm, emission: 590 nm; SYNERGYneo microplate reader [BioTek, USA]). Each plate had four wells of the blank with no cell culture, positive controls (dimethyl sulfoxide [DMSO] vehicle treatment with β23 induction) and negative controls (no induction of β23 by maintaining in doxycycline [200 ng/ml]-containing media). To assess the appropriateness of our assay for high-throughput screening, the Z′ factor was quantified as follows:
Z′ factor = 1 − 3(SDp + SDn) / (MEANp − MEANn), where MEANp and MEANn are the means of the positive and negative controls, respectively, and SDp and SDn are the standard deviations of the positive and negative controls, respectively. A high-throughput screening-ready assay should have a Z′ factor between 0.5 and 1.
Western blot analysis
For Triton X-100-soluble and -insoluble fraction separation, SH-SY5Y cells were harvested and processed into nonionic detergent-soluble and detergent-insoluble fractions in lysis buffer containing PBS, 1% Triton X-100, Phosphatase Inhibitor Cocktail II and III (Sigma-Aldrich), and a complete protease inhibitor mixture. The lysates were centrifuged at 100,000g for 20 min at 4°C. The resulting pellet and supernatant (S1, soluble) fractions were collected. The pellet was washed once in lysis buffer containing nonionic detergent (1% Triton X-100) and solubilized in lysis buffer containing 1% SDS and 0.5% sodium deoxycholate. The homogenate was centrifuged and the resulting supernatant (nonionic detergent-insoluble) was collected. For total lysates, cells were harvested, washed twice with PBS, and lysed with Pierce RIPA buffer (150 mM NaCl, 50 mM Tris, pH 8.0, 1% NP40, 1% SDS, and 0.5% sodium deoxycholate, and a protease inhibitor mixture; Thermo Scientific) for 30 min on ice. Following this, cell lysates were prepared by centrifugation (22,250g at 4°C for 20 min). Protein concentration was determined using the Pierce™ BCA protein assay kit (Thermo Scientific). Equal amounts of protein (10–20 μg) were resolved on 8% to 16% SDS-PAGE and transferred to a nitrocellulose (NC) membrane. After washing with TBST (Tris-buffer solution-Tween20; 10 mM Tris-HCl [pH 7.6], 150 mM NaCl, and 0.05% Tween-20), membranes were blocked with 5% skim milk for 1 h and incubated with an appropriate primary antibody at the dilution recommended by the supplier. The membrane was then washed and primary antibodies were detected with HRP-conjugated secondary antibody. Immunoblot signals were visualized with Chemiluminescence (Pierce, USA). Densitometric analyses of immunoreactive bands were performed using NIH ImageJ software. The ratio between treated and control samples was calculated for each individual experiment and expressed relative to the control.
Fluorescence imaging
SH-SY5Y or HEK-293T cells were plated onto poly-D-lysine-coated coverslips at 10,000 cells/cm2. Following experimental procedures, cells were fixed with 4% paraformaldehyde in PBS and blocked in a solution containing 5% normal donkey serum (Jackson ImmunoResearch, USA), 2% BSA (Sigma), and 0.1% Triton X-100 (Sigma) for 1 h at room temperature. Samples were then incubated overnight with corresponding primary antibodies against proteins of interest at 4°C. Briefly, cells grown on coverslips were washed with PBS containing 0.1% Triton X-100 and incubated for 1 h with fluorescence-conjugated secondary antibodies (1:500; Invitrogen) at room temperature. The coverslips were mounted with 4′, 6-diamidino-2-phenylindole (DAPI). Fluorescent images were obtained using a fluorescence microscope (Axiovert, 200 M; Carl Zeiss, Germany) or confocal microscope (TCS SP8 STED; Leica Microsystems, Germany) for four channel fluorescence image acquisition. For thioflavin S staining, thioflavin S (500 mM) was dissolved in 50% ethanol. Fixed SH-SY5Y cells were then stained with thioflavin S for 7 min. As a differentiation step to remove nonspecific binding of the dye, a slide was soaked in 100%, 95%, and 90% ethanol solutions for 10 s each and then transferred to PBS. Subsequent blocking and primary antibody binding steps were followed as described above for immunofluorescence staining.
Real-time quantitative polymerase chain reaction (PCR)
Total RNA was extracted with QIAzol Lysis Reagent (cat# 79306; Qiagen) and then treated with DNase I to eliminate trace DNA contamination. cDNA was synthesized from total RNA (1.5 μg) using a first-strand cDNA synthesis kit (iScript cDNA synthesis kit; Bio-Rad, USA). The relative quantities of β23 mRNA expression were analyzed using real-time PCR (QuantStudio 6 flex Real-Time PCR System; Applied Biosystems, USA). SYBR Green PCR master mix (cat# 4309155; Applied Biosystems) was used according to the manufacturer’s instructions. The relative mRNA expression levels of β23 were calculated by the ∆∆Ct method (Livak and Schmittgen, 2001) using GAPDH as an internal loading control. The primer sequences for real-time gene amplification are as follows:
hGAPDH: F- AAACCCATCACCATCTTCCAG, R- AGGGGCCATCCACAGTCTTCT;
β23: F- ATCTCGAGATGTGCGACTACAAGGACGAC, R-TACTCGAGTCAAGCGTAGTCTGGGACGTC.
Cell viability analysis
SH-SY5Y cells were plated in 6-well plates at a density of 0.5 × 106 cells per well. Following transient transfection with indicated constructs, cells were grown in DMEM containing low serum (2.5% FBS) for indicated days of α-synuclein, Tet-regulated β23, or mutant huntingtin (Htt94Q-CFP) expression. For α-synuclein toxicity, SH-SY5Y cells were treated with 6-OHDA or PBS vehicle control. SH-SY5Y cells were trypsinized to yield single-cell suspensions that were washed twice with PBS before resuspension in serum-free DMEM. Resuspended cells were mixed with an equal volume of 0.4% trypan blue (wt/vol) and incubated for 2 min at room temperature. Live and dead cells were analyzed automatically using the Countess II Automated Cell Counter (Life Technologies, USA). Cell Counting Kit-8 (CCK8) (Dojindo Molecular Technologies, USA) was also used to assess viability of HEK-293T cells by following the manufacturer’s instructions.
Purification of recombinant protein, in vitro aggregation, and PFFs preparation
Plasmid pRK172-human α-synuclein was transformed to BL21-competent Escherichia coli by heat-shock transformation. Recombinant α-synuclein was induced and purified as previously described. Purified α-synuclein (100 μM) in the presence or absence of the PCIII was incubated in 1.5 ml EP tubes in sodium acetate buffer (100 mM, pH 7.5) at 37°C on a shaking incubator (300 rpm; Vision Scientific, Korea). At indicated days of incubation, EP tubes with protein solutions were subjected to fibril formation assessment using thioflavin T (100 μM; Sigma-Aldrich) fluorescence assay as reported previously. In each sample, thioflavin T binding and fluorescence were determined using a microplate fluorescence spectrometer (excitation: 450 nm, emission: 490 nm; SYNERGYneo microplate reader [BioTek]). For preparation of α-synuclein PFFs, α-synuclein fibrils (5 mg/ml) prepared from the 7 days incubation of monomeric α-synuclein were subjected to sonication (Vibra-Cell; Sonics & Materials, USA). Sixty pulses with 0.5 s duration of sonication power level 10% were applied with brief pause between every 10 pulses to prevent solution from heating up excessively. Quality of prepared PFF was validated by electron microscopy.
To investigate the disaggregating effects of PCIII against α-synuclein PFFs, α-synuclein fibrils (50 μM) prepared from the 7 days incubation of monomeric α-synuclein were subjected to in vitro incubation in sodium acetate buffer (100 mM, pH 7.5) with or without PCIII (100 μM) at 37°C on a shaking incubator (300 rpm; Vision Scientific). Samples were taken at 1, 3, and 7 days of incubation and subjected to thioflavin T fluorescence reading or western blot analysis.
Negative staining and transmission electron microscopy (TEM)
Recombinant human α-synuclein from in vitro reaction was applied to glow-discharged carbon-coated copper grids. After allowing the sample to absorb for 2 min and blotting off buffer solution onto Whatman paper, then the sample on the grids were stained with 2% (w/v) uranyl acetate (UrAc) for 1 min. Then it was blotted off UrAc. TEM images were recorded at Korea Basic Science Institute (KBSI) with the Technai G2 Spirit Twin microscope (FEI, USA) at an acceleration voltage of 120 kV.
Statistics
Quantitative data are presented as the mean ± standard error of the mean (SEM). Statistical significance was assessed with either an unpaired two-tailed Student’s t-test for two-group comparisons Tukey’s honest significant difference post-hoc analysis for comparison of three or more groups. The results were considered significant at the level of P < 0.05.
RESULTS
Tet-Off expression of nuclear amyloid aggregates
To establish a cellular model of nuclear amyloid accumulation, we generated a Tet-Off
construct capable of expressing artificial strands of β-sheet structure with an N-terminal
nuclear localization sequence (NLS), FLAG tag and C-terminal influenza HA tag (Fig. 1A). In this manuscript, this construct is subsequently called nuclear β23, following
previous studies in which β23’s amyloid-like structure has been characterized (Olzscha et al., 2011; Woerner et al., 2016). Since β23 and reporter protein mCherry expression is under the control of a tetracycline-responsive
promoter (TetP-β23), coexpression of a tTA is required for the activation of the Tet
promoter and subsequent transcription of mCherry-internal ribosome entry site (IRES)-β23
(Fig. 1B). As designed, cotransfection with pCMV-tTA and TetP-nuclear β23 resulted in the
expression of nuclear β23 and fluorescent reporter mCherry in HEK-293T cells (Fig. 1C,
Natural compound screening for novel inhibitors of nuclear aggregate toxicity
Following this, we assessed whether nuclear expression of amyloid β23 is toxic to
HEK-293T cells. HEK-293T cells were transfected with pCMV-tTA and TetP-β23 constructs
and incubated in complete media containing either doxycycline or vehicle as a control.
In nuclear β23-expressing cells cultured for 2 days in the absence of doxycycline,
cell viability measured by Alamar blue assay decreased to about 50% (Fig. 2A). Since the cell viability assay provided consistent and robust toxicity results,
we used the Tet-Off nuclear β23 expression system to screen natural compounds that
could potentially inhibit nuclear aggregate toxicity. For timed expression of β23,
HEK-293T cells were transfected with pCMV-tTA and TetP-nuclear β23 and plated onto
96-well plates in the presence of doxycycline to suppress nuclear β23 expression (Figs. 2B and 2C). After plating, cells were treated with 640 natural compounds extracted and purified
from clinically prescribed herbal medications (0.35 μg/ml). On the following day,
nuclear β23 expression was induced by removing doxycycline. After 2 days of β23 induction,
high-throughput cell viability was assessed by reading Alamar blue fluorescence (Fig. 2D). Z′ factors calculated for each plate using Alamar blue fluorescence intensities
for negative (doxycycline treatment) and positive (no doxycycline + DMSO vehicle)
controls were between 0.5 and 1.0 (

To determine whether cell death inhibition by these novel compounds is rather selective
against toxic protein aggregation, an additional toxic insult (doxorubicin) was introduced
into HEK-293T cells; after which, the cytoprotective effect of β23 inhibitors was
examined (
PCIII prevents amyloid aggregate toxicity
To assess the potential central nervous system applications for inhibitors of nuclear protein aggregation toxicity, we used the SH-SY5Y neuroblastoma cell line to examine the cytoprotective functions of select compounds. Transient transfection with pCMV-tTA and TetP-nuclear β23 in SH-SY5Y cells led to the expression of nuclear amyloid β23 and reporter protein mCherry (Fig. 3A). Nuclear β23 expression for 24 h in SH-SY5Y cells resulted in approximately 80% cell toxicity (Fig. 3B). All compounds (PCIII, kaempferol, oregonin, and ophiocarpine) increased SH-SY5Y cell viability against nuclear β23 induction, with PCIII providing maximal protection (up to 60% cell viability; Fig. 3B). Following this, we investigated whether these compounds improved cell viability against nuclear β23 toxicity through the alteration of protein aggregate clearance. To monitor β23 clearance over time, SH-SY5Y cells were transfected with pCMV-tTA and TetP-nuclear β23 (Fig. 3B; top panel). Twenty-four hours after transfection, doxycycline was added to stop further β23 and mCherry transcription in SH-SY5Y cells, and β23 stability was assessed by immunofluorescence using anti-FLAG antibodies. Immunofluorescence showed that PCIII treatment markedly increased the removal of FLAG-tagged β23 from the nucleus, whereas β23 still remained in the vehicle treatment control for 37 h following the addition of doxycycline (Figs. 3C and 3D). To a lesser extent, oregonin facilitated the removal of nuclear FLAG-tagged β23 (Figs. 3C and 3D). In contrast, despite their cytoprotective ability, kaempferol and ophiocarpine had no effect on β23 degradation. These compounds had no effect on reporter protein expression and stability as shown by mCherry fluorescence intensity (Fig. 3C). Moreover, transcription of β23 mRNA was not altered by β23 inhibitors (Fig. 3E).

Regulation of the stability of nuclear β23 by PCIII was further determined by quantitative western blot. Immunoblot results showed no difference in β23 levels over time, which suggests that nuclear amyloid β23 was highly stable and resistant to degradation (Figs. 3F and 3G). Consistent with the immunofluorescence results, PCIII treatment led to approximately 70% degradation of β23 (Figs. 3F and 3G). Taken together, these results show that PCIII’s inhibition of nuclear β23-induced toxicity correlates with its ability to accelerate the degradation of nuclear amyloid β23, which is otherwise highly stable and cannot be cleared via an intrinsic degradation machinery.
Afterwards, the mechanisms of PCIII-mediated nuclear β23 clearance in SH-SY5Y cells
were elucidated. Tet-Off expression construct of β23 with no NLS sequence (TetP-β23)
was generated to assess whether PCIII’s cytoprotective effect on amyloid toxicity
is specific to nuclear aggregates. SH-SY5Y cells were co-transfected with pCMV-tTA
and TetP-β23 constructs. β23 was expressed for the initial 24 h and further expression
was terminated by doxycycline treatment. Cell viability was assessed 24 h after doxycycline
treatment. Expression of β23 amyloid in SH-SY5Y cells resulted in robust cell death
which was largely prevented by PCIII treatment (
Amyloid selectivity of PCIII-mediated protein degradation was examined by generating
an artificial protein containing an alpha helix structure (αS824), following previous
reports (Olzscha et al., 2011; Woerner et al., 2016). Tet-Off construct of αS824 was cloned with NLS and FLAG sequence in the N terminus
and HA tag in the C terminus (TetP-nuclear αS824). In contrast to aggregate-forming
β23, αS824 was distributed to the soluble fraction (
Next, amyloid clearance facilitated by PCIII was investigated. The proteasome inhibitor,
MG132, was treated for 24 h during clearance of nuclear β23 or αS824 in the presence
or absence of PCIII (
PCIII attenuates huntingtin aggregation and toxicity
Of the compounds that were cytoprotective against nuclear and cytosolic aggregates,
PCIII demonstrated the greatest protective and disaggregative effects. PCIII extracted
and purified from Angelica decursiva (
To determine PCIII’s therapeutic effects on disease-associated proteins, we selected a cellular model of mutant huntingtin aggregation, which is linked to hyperkinetic movement disorders in humans, such as Huntington’s disease (Scherzinger et al., 1997). To examine whether PCIII can regulate nuclear huntingtin aggregation in cells, we transfected SH-SY5Y cells with pCMV-tTA and 94 polyglutamine repeat-containing huntingtin protein (TetP-Htt94Q-CFP) to induce aggregate formation (Fig. 4A). A proteasome inhibitor (MG132) was added to facilitate nuclear aggregate formation as previously described (Maynard et al., 2009; Wyttenbach et al., 2000). Separation of protein lysates into detergent (1% Triton X-100)-soluble and -insoluble fractions demonstrated that PCIII treatment markedly prevented insolubility of mutant huntingtin aggregates and redistributed huntingtin into soluble fractions (Figs. 4B and 4C). Consistent with western blot results, immunofluorescence demonstrated that PCIII treatment of SH-SY5Y cells was associated with substantial removal of cytosolic and nuclear aggregate puncta formed because of Htt94Q expression (Figs. 4D–F). Moreover, the growth of mutant huntingtin aggregate size in DMSO-treated controls was inhibited or diminished by PCIII treatment in the nucleus and cytoplasm, respectively (Figs. 4E and 4F). Mutant huntingtin aggregate expression led to 80% cell death in SH-SY5Y cells; however, PCIII treatment improved cell viability by approximately 20% (Fig. 4G).
PCIII attenuates α-synuclein aggregation and toxicity
After observing the promising effects of PCIII on amyloid β23 and huntingtin aggregate
toxicity, we tested PCIII’s protective effects on pathological α-synuclein aggregates
associated with PD. α-Synuclein was selected since its aggregates have been observed
in the cytosol and nucleus (Goers et al., 2003; Gorbatyuk et al., 2008; Kontopoulos et al., 2006; Rousseaux et al., 2016). Moreover, the presence of α-synuclein aggregates in Lewy body inclusions characterizes
a wide range of human brain disorders (Shults, 2006; Spillantini and Goedert, 2000). Since PCIII was able to enhance clearance of established nuclear amyloid structures
(i.e., β23), we hypothesized that α-synuclein PFFs could also be modulated by PCIII.
To test this possibility, HA-α-synuclein expressing SH-SY5Y cells were incubated with
PFFs (5 μg/ml;

In addition to the above mentioned cellular model of α-synuclein aggregation, toxin
induced cellular PD model was also generated by treating HA-α-synuclein expressing
SH-SY5Y cells with 6-OHDA to induce α-synuclein aggregation and toxicity (
PCIII disaggregates α-synuclein PFFs
To investigate the mechanisms by which PCIII decreased α-synuclein aggregate formation, recombinant α-synuclein was incubated in solution in the presence or absence of PCIII. Thioflavin T fluorescence, which is sensitive to amyloid fibril formation, demonstrated that the amount of α-synuclein oligomers or fibrils increased over time and reached maximum levels at approximately 4 to 5 days of incubation (Figs. 6A and 6B). Under a treatment of 10 μM PCIII, α-synuclein aggregation was slightly inhibited. Following 50 μM PCIII treatment, α-synuclein aggregation was substantially diminished. In 50 μM PCIII-added reaction, α-synuclein oligomer or fibril aggregation was only 30% of the amount accumulated in vehicle controls (Figs. 6A and 6B). These results indicate that PCIII directly affects α-synuclein aggregation processes in vitro.
Next, we sought to determine whether PCIII is capable of disintegrating already established
α-synuclein PFFs of β-strand conformation. In vitro incubation of PFF with 100 μM
PCIII for 7 days substantially decreased the thioflavin T fluorescence signal compared
with that at the start of incubation (i.e., a 40% decrease; Fig. 6C). In contrast, in vitro incubation of α-synuclein PFFs (
DISCUSSION
Here, we report the discovery of nuclear amyloid inhibitors that could serve as potential therapeutic agents for PD and other proteinopathies. The identification of several natural compounds was made possible by using a novel Tet-inducible nuclear β23 expression system. Previous studies have induced artificial β23 expression within the cytoplasm or nucleus to understand the molecular mechanisms of protein aggregate toxicity (Woerner et al., 2016). However, constitutive expression has limited applications for high-throughput screening. Synchronizing toxic protein expression and compound treatments in 96-well plates is difficult with constitutive expression. Moreover, timing concerns can compromise stable plating practices. In contrast, with the Tet-Off system, the timing of transgene expression is controlled by the addition of doxycycline. Indeed, this type of conditional gene expression system is commonly used to model toxic protein expression in cells and in vivo (Goverdhana et al., 2005; Lee et al., 2012). Another merit of our model is the coexpression of fluorescent reporter mCherry and nuclear β23. Tet-Off expression of β23 and mCherry allowed us to monitor nuclear β23 clearance in reference of mCherry reporter fluorescence.
There have been many studies on compounds that inhibit protein aggregation, including α-synuclein and amyloid β (Herva et al., 2014; Jha et al., 2016; Kim et al., 2010; 2015; Singh et al., 2013). Most of these studies performed in vitro incubation of recombinant proteins. Incubation of these proteins in solution leads to the formation of oligomers or fibrils, which can be detected quantitatively using amyloid-sensitive thioflavin T dye. With this assay system, potential protein aggregate-modifying compounds that are effective in vivo have been identified. However, this assay system is largely low throughput. Since producing high protein aggregates levels takes several days in vitro, large-scale compound screening with this system is not practical. Moreover, chemical compound instability presents additional challenges. Another weakness of this in vitro assay system is that the aggregation inhibitors identified may not protect cells against toxicity caused by protein aggregation. Moreover, some compounds with high potency in vitro may be unsuitable due to unwanted cell toxicity or undesirable pharmacokinetic properties. Even in cell culture systems, overexpression of α-synuclein itself cannot produce amyloid-like fibril formation without additional challenges like introduction of preformed α-synuclein fibrils (Volpicelli-Daley et al., 2011). However, our β23 expression system, which readily forms amyloid-like aggregates, overcomes the limitation of conventional cellular α-synuclein overexpression models. In view of these issues, our cellular model is well suited to efficiently screen large-scale compound libraries for protective agents against nuclear protein aggregation. Cell toxicity induced by nuclear β23 expression is similar to that associated with many diseases, including PD and Huntington’s disease. Indeed, PCIII which has been identified as an inhibitor of β23 aggregates profoundly inhibited cellular toxicity induced by both α-synuclein and huntingtin aggregates. Although their protective mechanisms may be diverse, natural compounds that protect cells against nuclear protein aggregates can be readily assessed with Alamar blue fluorescence assay.
The nuclear β23 toxicity-inhibiting natural compounds identified in this study include PCIII, oregonin, kaempferol, and ophiocarpine. Interestingly, the chemical structure of oregonin resembles that of curcumin and its analog, which bind to α-synuclein fibrils and exert protective functions against fibril-induced toxicity (Jha et al., 2016; Singh et al., 2013). Of these compounds, PCIII was thoroughly examined due to its strong protective effects. Isothermal titration calorimetry analysis of PCIII revealed weak interaction of this compound with α-synuclein fibril (data not shown). Unfortunately, the interaction between PCIII and α-synuclein fibril seems too weak or slow to obtain thermodynamic values (over mM range of Km value) although we observed slowly increasing series of spikes of heat flow with PCIII injections. Ongoing disaggregation of fibrils into monomers in competition with compound-fibril binding might interfere with ITC measurements. More sensitive binding assays, such as surface plasmon resonance, could be applied to elucidate thermodynamic binding parameters of PCIII with diverse disease-associated amyloid aggregates. Nevertheless, relatively weak binding affinity of PCIII for α-synuclein fibril seems sufficient for disassembly of protein aggregates in vitro and in cells. In a similar manner, a recently reported compound exhibits very weak binding affinity to amyloid β while it exerts strong ability to degrade amyloid β aggregate and provide substantial protection in Alzheimer’s disease mouse models (Kim et al., 2015). Still, it would be instrumental to synthesize derivatives of PCIII to enhance its binding affinity for protein aggregates in an attempt to further improve its therapeutic potential.
We have shown that PCIII prevents β23-, mutant huntingtin-, and α-synuclein-induced proteotoxicity by facilitating clearance of protein aggregates in vitro and in cells. Interestingly, PCIII markedly inhibits cytosolic and nuclear protein aggregates, making it a potentially attractive agent for controlling protein aggregates throughout the cell and treating several neurodegenerative diseases, including Huntington’s disease and PD. PCIII also has the ability to interact with established fibrils and convert them into monomers, which is an important property relevant to its potential therapeutic applications for advanced PD. Patients diagnosed with PD present motor symptoms associated with substantial loss of dopaminergic neurons (Lang and Lozano, 1998a; 1998b). Lewy body pathology is thought to begin before clinical symptoms are apparent (Lang and Lozano, 1998a; 1998b). Protein inclusions in dopaminergic neurons, which are critical for motor control, kill cells and impair cellular functions by sequestering functionally important proteins (Lee et al., 2004; Olzscha et al., 2011). Thus, compounds that disaggregate protein inclusions by eliminating α-synuclein oligomers and fibrils are more likely to improve clinical motor symptoms in patients with PD. To advance the application of PCIII for disease therapy, it will be necessary to investigate its effectiveness in appropriate animal models of PD or other neurodegenerative diseases. Unfortunately, the effect of PCIII on mouse brain function has yet to be tested. Extensive pharmacological and safety profiling must be completed before the effectiveness of PCIII in mouse models of PD and α-synuclein aggregation can be assessed. Notably, PCIII is not toxic to SH-SY5Y cells even at 100 μM doses. PCIII (1 μM) was an effective therapeutic dose that provided substantial protection against β23, mutant huntingtin and α-synuclein toxicity. Moreover, this low dose of PCIII was sufficient to consistently remove high molecular weight α-synuclein fibril species in a cellular model of PFF uptake. Interestingly, A. decursiva compounds that are structurally related to PCIII have been shown to readily penetrate the blood-brain barrier (Zhang et al., 2011). No overt toxicity has been profiled for extracts from Peucedanum species extracts (Sarkhail et al., 2013). Ultimately, PCIII has potential therapeutic applications and may provide safe treatments for brain proteinopathies. However, extensive animal studies using pure PCIII are needed.
Supplementary Material
ACKNOWLEDGMENTS
le>This research was supported by grants from the National Research Foundation of Korea (NRF-2015R1C1A1A01052708 and NRF-2017M3C7A1043848) funded by the Korea Ministry of Science, ICT, & Future Planning (MSIP). This work was supported by grants from the NIH/NINDS NS38377, NIH/NINDS NS082205, and NS098006. The authors also acknowledge the joint participation by the Adrienne Helis Malvin Medical Research Foundation and the Diana Helis Henry Medical Research Foundation through their direct engagement in the continuous active conduct of medical research in conjunction with The Johns Hopkins Hospital and the Johns Hopkins University School of Medicine and the Foundation’s Parkinson’s Disease Programs H-2013. We also thank Professor Jae-Byum Chang of the Sungkyunkwan University for his support in performing confocal microscope imaging.
Disclosure
The authors have no potential conflicts of interest to disclose.
Article information
Articles from Mol. Cells are provided here courtesy of Mol. Cells
References
- Brahmachari, S., Ge, P., Lee, S.H., Kim, D., Karuppagounder, S.S., Kumar, M., Mao, X., Shin, J.H., Lee, Y., and Pletnikova, O. (2016). Activation of tyrosine kinase c-Abl contributes to alpha-synuclein-induced neurodegeneration. J Clin Invest. 126, 2970-2988.
- Chen, I.S., Chang, C.T., Sheen, W.S., Teng, C.M., Tsai, I.L., Duh, C.Y., and Ko, F.N. (1996). Coumarins and antiplatelet aggregation constituents from Formosan Peucedanum japonicum. Phytochemistry. 41, 525-530.
- Cui, L., Jeong, H., Borovecki, F., Parkhurst, C.N., Tanese, N., and Krainc, D. (2006). Transcriptional repression of PGC-1alpha by mutant huntingtin leads to mitochondrial dysfunction and neurodegeneration. Cell. 127, 59-69.
- Gamen, S., Anel, A., Perez-Galan, P., Lasierra, P., Johnson, D., Pineiro, A., and Naval, J. (2000). Doxorubicin treatment activates a Z-VAD-sensitive caspase, which causes deltapsim loss, caspase-9 activity, and apoptosis in Jurkat cells. Exp Cell Res. 258, 223-235.
- Goers, J., Manning-Bog, A.B., McCormack, A.L., Millett, I.S., Doniach, S., Di Monte, D.A., Uversky, V.N., and Fink, A.L. (2003). Nuclear localization of alpha-synuclein and its interaction with histones. Biochemistry. 42, 8465-8471.
- Gorbatyuk, O.S., Li, S., Sullivan, L.F., Chen, W., Kondrikova, G., Manfredsson, F.P., Mandel, R.J., and Muzyczka, N. (2008). The phosphorylation state of Ser-129 in human alpha-synuclein determines neurodegeneration in a rat model of Parkinson disease. Proc Natl Acad Sci U S A. 105, 763-768.
- Goverdhana, S., Puntel, M., Xiong, W., Zirger, J.M., Barcia, C., Curtin, J.F., Soffer, E.B., Mondkar, S., King, G.D., and Hu, J. (2005). Regulatable gene expression systems for gene therapy applications: progress and future challenges. Mol Ther. 12, 189-211.
- Herva, M.E., Zibaee, S., Fraser, G., Barker, R.A., Goedert, M., and Spillantini, M.G. (2014). Anti-amyloid compounds inhibit alpha-synuclein aggregation induced by protein misfolding cyclic amplification (PMCA). J Biol Chem. 289, 11897-11905.
- Jha, N.N., Ghosh, D., Das, S., Anoop, A., Jacob, R.S., Singh, P.K., Ayyagari, N., Namboothiri, I.N., and Maji, S.K. (2016). Effect of curcumin analogs onalpha-synuclein aggregation and cytotoxicity. Sci Rep. 6, 28511.
- Kim, H.Y., Kim, H.V., Jo, S., Lee, C.J., Choi, S.Y., Kim, D.J., and Kim, Y. (2015). EPPS rescues hippocampus-dependent cognitive deficits in APP/PS1 mice by disaggregation of amyloid-beta oligomers and plaques. Nat Commun. 6, 8997.
- Kim, H.Y., Kim, Y., Han, G., and Kim, D.J. (2010). Regulation of in vitro Abeta1-40 aggregation mediated by small molecules. J Alzheimers Dis. 22, 73-85.
- Kontopoulos, E., Parvin, J.D., and Feany, M.B. (2006). Alpha-synuclein acts in the nucleus to inhibit histone acetylation and promote neurotoxicity. Hum Mol Genet. 15, 3012-3023.
- Landles, C. and Bates, G.P. (2004). Huntingtin and the molecular pathogenesis of Huntington’s disease. Fourth in molecular medicine review series. EMBO Rep. 5, 958-963.
- Lang, A.E. and Lozano, A.M. (1998a). Parkinson’s disease. First of two parts. N Engl J Med. 339, 1044-1053.
- Lang, A.E. and Lozano, A.M. (1998b). Parkinson’s disease. Second of two parts. N Engl J Med. 339, 1130-1143.
- Lee, W.C., Yoshihara, M., and Littleton, J.T. (2004). Cytoplasmic aggregates trap polyglutamine-containing proteins and block axonal transport in a Drosophila model of Huntington’s disease. Proc Natl Acad Sci U S A. 101, 3224-3229.
- Lee, Y., Dawson, V.L., and Dawson, T.M. (2012). Animal models of Parkinson’s disease: vertebrate genetics. Cold Spring Harb Perspect Med. 2, a009324.
- Livak, K.J. and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 25, 402-408.
- Luk, K.C., Kehm, V., Carroll, J., Zhang, B., O’Brien, P., Trojanowski, J.Q., and Lee, V.M. (2012). Pathological alpha-synuclein transmission initiates Parkinson-like neurodegeneration in nontransgenic mice. Science. 338, 949-953.
- Mahul-Mellier, A.L., Fauvet, B., Gysbers, A., Dikiy, I., Oueslati, A., Georgeon, S., Lamontanara, A.J., Bisquertt, A., Eliezer, D., and Masliah, E. (2014). c-Abl phosphorylates alpha-synuclein and regulates its degradation: implication for alpha-synuclein clearance and contribution to the pathogenesis of Parkinson’s disease. Hum Mol Genet. 23, 2858-2879.
- Mao, X., Ou, M.T., Karuppagounder, S.S., Kam, T.I., Yin, X., Xiong, Y., Ge, P., Umanah, G.E., Brahmachari, S., and Shin, J.H. (2016). Pathological alpha-synuclein transmission initiated by binding lymphocyte-activation gene 3. Science. 353, aah3374.
- Masuda, M., Suzuki, N., Taniguchi, S., Oikawa, T., Nonaka, T., Iwatsubo, T., Hisanaga, S., Goedert, M., and Hasegawa, M. (2006). Small molecule inhibitors of alpha-synuclein filament assembly. Biochemistry. 45, 6085-6094.
- Maynard, C.J., Bottcher, C., Ortega, Z., Smith, R., Florea, B.I., Diaz-Hernandez, M., Brundin, P., Overkleeft, H.S., Li, J.Y., and Lucas, J.J. (2009). Accumulation of ubiquitin conjugates in a polyglutamine disease model occurs without global ubiquitin/proteasome system impairment. Proc Natl Acad Sci U S A. 106, 13986-13991.
- Norris, E.H., Giasson, B.I., and Lee, V.M. (2004). Alpha-synuclein: normal function and role in neurodegenerative diseases. Curr Top Dev Biol. 60, 17-54.
- Olzscha, H., Schermann, S.M., Woerner, A.C., Pinkert, S., Hecht, M.H., Tartaglia, G.G., Vendruscolo, M., Hayer-Hartl, M., Hartl, F.U., and Vabulas, R.M. (2011). Amyloid-like aggregates sequester numerous metastable proteins with essential cellular functions. Cell. 144, 67-78.
- Ross, C.A. and Poirier, M.A. (2004). Protein aggregation and neurodegenerative disease. Nat Med. 10, S10-S17.
- Rousseaux, M.W., de Haro, M., Lasagna-Reeves, C.A., De Maio, A., Park, J., Jafar-Nejad, P., Al-Ramahi, I., Sharma, A., See, L., and Lu, N. (2016). TRIM28 regulates the nuclear accumulation and toxicity of both alpha-synuclein and tau. Elife. 5, e19809.
- Sarkhail, P., Shafiee, A., and Sarkheil, P. (2013). Biological activities and pharmacokinetics of praeruptorins from Peucedanum species: a systematic review. Biomed Res Int. 2013, 343808.
- Scherzinger, E., Lurz, R., Turmaine, M., Mangiarini, L., Hollenbach, B., Hasenbank, R., Bates, G.P., Davies, S.W., Lehrach, H., and Wanker, E.E. (1997). Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo. Cell. 90, 549-558.
- Scotter, E.L., Chen, H.J., and Shaw, C.E. (2015). TDP-43 proteinopathy and ALS: insights into disease mechanisms and therapeutic targets. Neurotherapeutics. 12, 352-363.
- Scotter, E.L., Vance, C., Nishimura, A.L., Lee, Y.B., Chen, H.J., Urwin, H., Sardone, V., Mitchell, J.C., Rogelj, B., and Rubinsztein, D.C. (2014). Differential roles of the ubiquitin proteasome system and autophagy in the clearance of soluble and aggregated TDP-43 species. J Cell Sci. 127, 1263-1278.
- Shults, C.W. (2006). Lewy bodies. Proc Natl Acad Sci U S A. 103, 1661-1668.
- Singh, P.K., Kotia, V., Ghosh, D., Mohite, G.M., Kumar, A., and Maji, S.K. (2013). Curcumin modulates alpha-synuclein aggregation and toxicity. ACS Chem Neurosci. 4, 393-407.
- Spillantini, M.G. and Goedert, M. (2000). The alpha-synucleinopathies: Parkinson’s disease, dementia with Lewy bodies, and multiple system atrophy. Ann N Y Acad Sci. 920, 16-27.
- Takata, M., Shibata, S., and Okuyama, T. (1990). Structures of angular pyranocoumarins of Bai-Hua Qian-Hu, the root of peucedanum praeruptorum1. Planta Med. 56, 307-311.
- Volpicelli-Daley, L.A., Luk, K.C., Patel, T.P., Tanik, S.A., Riddle, D.M., Stieber, A., Meaney, D.F., Trojanowski, J.Q., and Lee, V.M. (2011). Exogenous alpha-synuclein fibrils induce Lewy body pathology leading to synaptic dysfunction and neuron death. Neuron. 72, 57-71.
- Woerner, A.C., Frottin, F., Hornburg, D., Feng, L.R., Meissner, F., Patra, M., Tatzelt, J., Mann, M., Winklhofer, K.F., and Hartl, F.U. (2016). Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA. Science. 351, 173-176.
- Wyttenbach, A., Carmichael, J., Swartz, J., Furlong, R.A., Narain, Y., Rankin, J., and Rubinsztein, D.C. (2000). Effects of heat shock, heat shock protein 40 (HDJ-2), and proteasome inhibition on protein aggregation in cellular models of Huntington’s disease. Proc Natl Acad Sci U S A. 97, 2898-2903.
- Zhang, Z., Liu, Y.Y., Su, M.Q., Liang, X.F., Wang, W.F., and Zhu, X. (2011). Pharmacokinetics, tissue distribution and excretion study of dl-praeruptorin A of Peucedanum praeruptorum in rats by liquid chromatography tandem mass spectrometry. Phytomedicine. 18, 527-532.