Poly(ADP-ribosyl)ation of p53 Contributes to TPEN-Induced Neuronal Apoptosis

Hyun-Lim Kim, Hana Ra, Ki-Ryeong Kim, Jeong-Min Lee, Hana Im, and Yang-Hee Kim

Abstract

Depletion of intracellular zinc by N,N,N′,N′-tetrakis(2-pyridylmethyl) ethylenediamine (TPEN) induces p53-mediated protein synthesis-dependent apoptosis of mouse cortical neurons. Here, we examined the requirement for poly(ADP-ribose) polymerase (PARP)-1 as an upstream regulator of p53 in zinc depletion-induced neuronal apoptosis. First, we found that chemical inhibition or genetic deletion of PARP-1 markedly attenuated TPEN-induced apoptosis of cultured mouse cortical neurons. Poly(ADP-ribosyl)ation of p53 occurred starting 1 h after TPEN treatment. Suggesting the critical role of PARP-1, the TPEN-induced increase of stability and activity of p53 as well as poly(ADP-ribosyl)ation of p53 was almost completely blocked by PARP inhibition. Consistent with this, the induction of downstream proapoptotic proteins PUMA and NOXA was noticeably reduced by chemical inhibitors or genetic deletion of PARP-1. TPEN-induced cytochrome C release into the cytosol and caspase-3 activation were also blocked by inhibition of PARP-1. Taken together, these findings indicate that PARP-1 is essential for TPEN-induced neuronal apoptosis.

Keywords: caspase-3, NOXA, p53, poly(ADP-ribose) polymerase, PUMA

INTRODUCTION

Zinc ions are required for the proper action of many enzymes, structural proteins, and zinc finger transcription factors (Coleman, 1992). Zinc acts as a neurotransmitter in the central nervous system, where it accumulates in synaptic vesicles at high (i.e., mM) concentrations, is released by presynaptic stimulation, and regulates synaptic transmission (Frederickson and Bush, 2001). Under normal conditions, intracellular zinc concentration is tightly regulated at very low (i.e., pM) levels (Bozym et al., 2006). Not only does the accumulation of excess zinc after ischemia, epileptic seizures, and traumatic brain injury lead to neuronal death (Choi and Koh, 1998), but the severe depletion of zinc also induces neuronal apoptosis (Ahn et al., 1998; Lee et al., 2008a; Ra et al., 2009). In addition to neurons, many other cell types also undergo apoptosis after zinc depletion (Makhov et al., 2008; McCabe et al., 1993; Wilson et al., 2006).

Previously, we reported that zinc chelation by N,N,N′,N′-tetrakis(2-pyridylmethyl)ethylenediamine (TPEN) induces p53-dependent apoptosis in cultured mouse cortical neurons (Ahn et al., 1998; Lee et al., 2008a; Ra et al., 2009). Furthermore, chemical or genetic blockade of p53 markedly attenuates this TPEN-induced neuronal apoptosis by blocking induction of proapoptotic proteins, including p53 up-regulated modulator of apoptosis (PUMA), NOXA, and caspase-11 (Ra et al., 2009). These results suggest that the regulation of certain inducible apoptogenic proteins by p53 plays a key role in neuronal apoptosis (Ahn et al., 1998; Lee et al., 2008a; Ra et al., 2009).

p53 is an unstable protein with a short half-life (Jenkins et al., 1985). Normally, p53 is expressed at low levels in a latent form, which quickly accumulates in response to stress signals such as genotoxins, ultraviolet radiation (UV), or oxidative stress (Blagosklonny, 1997; Gorospe et al., 1998; Zhao et al., 2008). The stabilization of p53 is one of the mechanisms by which its activity is regulated. p53 expression is increased by the induction of transcription, post-transcriptional regulation by microRNA, post-translational stabilization by phosphorylation, methylation, or acetylation, and reduction of protein degradation via regulation of the ubiquitin-proteosome system (Appella and Anderson, 2001; Freeman and Espinosa, 2013; Hock and Vousden, 2014; Kroncke, 2003; Lavin and Gueven, 2006). In particular, p53 has many post-translational modification sites (Lavin and Gueven, 2006). However, although the post-translational regulation of p53 by methylation, acetylation, or phosphorylation has been well studied, the function of poly(ADP-ribosyl)ation (PARylation) of p53 is not fully understood.

PARP-1 and PARylation trigger key steps of apoptosis in nonneuronal cells via multiple pro-apoptotic stimuli (Nargi-Aizenman et al., 2002; Simbulan-Rosenthal et al., 1998; 1999; Wang et al., 1998). PARylation of p53 occurs during the early stages of apoptosis and is followed by p53 accumulation (Simbulan-Rosenthal et al., 1998; 1999; Won et al., 2006). An increased expression of p53 is required for apoptosis (Simbulan-Rosenthal et al., 1998), likely involving the transcriptional activation of pro-apoptotic genes and their interaction with other proteins. However, there are few reports on the possible role of poly(ADP-ribose) polymerase-1 (PARP-1) in early stages of apoptosis. Specifically, PARP-1 is a substrate for caspase-3 (Berger, 1985), and the main function of PARP-1 in apoptosis is as a late-stage regulator that maintains levels of intracellular NAD⁺/ATP for programmed cell death via its cleavage and inactivation (Berger, 1985; Berger and Petzold, 1985; Boulares et al., 1999).

Previously, we found that p53 stability and activity are related to zinc-depleted neuronal apoptosis (Ra et al., 2009) and that PARP-1 is critical regulator of neuronal death (Kim and Koh, 2002; Lee et al., 2008b). Therefore, in the present study, we examined whether PARP-1 acts as an upstream modulator of post-translational modification (i.e., PARylation) of p53, increasing the stability and activity of p53 and inducing the expression of pro-apoptotic proteins in zinc-depleted neuronal apoptosis.

MATERIALS AND METHODS

Mouse cortical neuron cultures

Cultures were prepared from mice at embryonic day 14–15 (Lee et al., 2008a; Ra et al., 2009). Dissociated cortical cells were plated onto poly- l-lysine/laminin-coated plates (Nunc, USA) in plating medium containing Dulbecco’s Modified Eagle’s Medium (DMEM, GibcoBRL, USA) with 20 mM glucose, 38 mM sodium bicarbonate, 2 mM glutamine, 5% fetal bovine serum, and 5% horse serum (Cambrex Corp., East Rutherford, USA). Cells from ten hemispheres were plated per 24-well plate. Cytosine arabinoside (10 μM) was added at day in vitro 3 (DIV3) to inhibit astroglial proliferation. For PARP-1^+/+ and PARP-1^−/− cortical neuron cultures, we isolated cells from PARP-1^+/+ and PARP-1^−/− mice (The Jackson Lab, USA).

Exposure to drugs

On DIV7, cultured neurons were exposed to TPEN (Sigma, USA) for 12–24 h in serum-free Eagle’s Minimal Essential Medium (EMEM, GibcoBRL). Before treatment, serum-containing medium was removed by multiple rinses and replaced with serum-free EMEM. The PARP inhibitor nicotinamide (NAM) or 3-aminobenzamide (AB) was added to serum-free EMEM 1 h before and continuously throughout TPEN treatment.

Estimation of cell death

First, cell death was estimated by direct counting after propidium iodide (PI) exclusion or by measuring the level of lactate dehydrogenase (LDH) released into the medium from irreversibly damaged cells 12–24 h after TPEN exposure unless otherwise specified (Ra et al., 2009). For PI staining, 2.5 μg/ml PI dye (Sigma, USA) was added directly to the bathing media 24 h after TPEN treatment, and cultures were washed with fresh EMEM to remove excessive PI dye 5 min later. Because only cells with plasma membrane damage uptake PI dye, the number of PI-stained neurons was considered a measure of drug-induced neuronal damage. For LDH assay, samples of bathing media (50 μl) obtained from neuronal cultures 24 h after TPEN treatment were added to 150 μl LDH release assay buffer [3.8 mM sodium pyruvate, 0.3 mg/ml reduced NADH in 0.1 M KPO4 buffer (pH 7.5)]. The absorbance of the reaction mixture at 340 nm, an index of NADH concentration, was recorded automatically at 2-s intervals for 5 min using a spectrophotometer (Molecular Devices, USA). LDH concentration was automatically calculated from the slope of the absorbance curve. Each PI-positive cell count or LDH value was scaled to the maximal value (= 100) after 24-h exposure to 100 μM N-methyl- d-aspartic acid (NMDA) in control cultures. To evaluate apoptotic cell death, cultured neurons were stained with 2 μg/ml Hoechst 33342 (Invitrogen, USA) prior to fluorescence microscopy (EVOS fl, AMG, USA), and cells exhibiting condensed chromatin nuclei were considered apoptotic. All experiments were repeated at least three times using cultures from different platings.

Reverse transcription polymerase chain reaction (RT-PCR)

Total RNA was isolated using the High Pure RNA Isolation Kit (Roche, Switzerland) and reverse transcribed to cDNA using the oligo(dT)14 primer (Promega, USA). PCR was performed with primer sets specific for Puma, Noxa, Bax, or D-glyceraldehyde-3-phosphate dehydrogenase (Gapdh). PCR was carried out for 30 cycles (94°C for 1 min, 60°C for 1 min, and 72°C for 1 min). Primer sequences were designed using published cDNA sequences: Puma (5′-CCATTTCTGGGGCTCCAGGA-3′, 5′-TCCTCAGCCCTCCCTGTCAC-3′), Noxa (5′-GAACGCGCCAGTGAACCCAA-3′, 5′-CTTTGTCTCCAATCCTCCGG-3′), Bax (5′-TGAGCGAGTGTCTCCGGCGA-3′, 5′-CACGCGGCCCCAGTTGAAGT-3′), and Gapdh (5′-CTACATGGTCTACATGTTCCAGTATG-3′, 5′-AGTTGTC ATGGATGACCTTGG-3′).

Western blots

Cell lysates were prepared in lysis buffer (50 mM HEPES, 150 mM NaCl, 1.5 mM MgCl₂, 5 mM EDTA, 2 mM EGTA, 1% Triton X-100, 0.5% SDS, pH 7.4). Thirty micrograms of total protein was separated by SDS-PAGE (10%) under reducing conditions and immunoblotted with antibodies against P-p53 (Ser15), PUMA, Bax, procaspase-3, cleaved caspase-3 (Cell Signaling Technology Inc., USA), poly (ADP-ribose) polymer (PAR), p53, or NOXA (Millipore, USA). Actin (Sigma) was used as a loading control. For immunoprecipitation, cell lysates were prepared using RIPA lysis buffer (50 mM Tris HCl, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS) and immuneprecipitated with p53 antibody (#OP33, Merck, Germany). Immunoprecipitated proteins were analyzed by SDS-PAGE (10%) and immunoblotted with poly(ADP-ribose) (PAR) antibody (Merck, Germany).

Immunocytochemistry and confocal microscopy

Neuronal cultures were fixed in 4% paraformaldehyde at 4°C for 30 min and permeabilized with 0.2% Triton X-100. After blocking with normal serum in phosphate-buffered saline, cultures were incubated with cytochrome C antibody (#556432, BD Bioscience, USA) at 4°C overnight. Cultures were washed and incubated with a FITC-conjugated secondary antibody (#715-095-150, Jackson ImmunoResearch Lab Inc, USA) for 2 h. Microscopic images were observed using a laser scanning microscope (TCS SP5, Leica, Germany).

Caspase-3 enzymatic activity assay

To detect enzymatic activity of caspase-3, the specific substrate for caspase-3, cleavage of ac-DEVD-amc (Millipore, USA), was measured using a fluorometer (Molecular Devices, USA). Protein lysates (750 μg total proteins) were incubated with 100 μM fluorogenic tetrapeptide substrate (ac-DEVD-amc). Each fluorescence value is presented as the fold difference from the mean value of sham controls.

Statistical analysis

All statistical comparisons were performed using analysis of variance (ANOVA) followed by Bonferroni correction for multiple comparisons. A P-value of less than 0.05 was considered statistically significant.

RESULTS

PARP-1 plays a critical role in TPEN-induced neuronal apoptosis

PARP-mediated post-translational modification (i.e., PARylation) of p53 is required for its rapid accumulation and activation during early stages of apoptosis before commitment to cell death (Simbulan-Rosenthal et al., 1998; 1999). As we previously found that p53 acts as an upstream regulator of TPEN-induced neuronal apoptosis, we examined here whether PARP-1 is essential for p53-mediated protein synthesis-dependent neuronal apoptosis.

To quantify neuronal apoptosis, we used three different methods. First, we measured the release of LDH from neurons into the bathing media. The chemical inhibition of PARP-1 significantly attenuated TEPN-induced neuronal death (Fig. 1A, left). However, some apoptotic insults such as staurosporine do not result in LDH leakage from cell because the process of apoptosis is followed by plasma membrane blebbing rather than rupture. Therefore, we next used PI staining to confirm TPEN-induced neuronal death and its reduction by PARP-1 inhibition. Consistent with our LDH results, the number of PI-positive neurons was markedly increased by TPEN (Fig. 1A, right; Fig. 1B), and some PI-positive nuclei showed typical shrunken and fragmented morphology (Fig. 1B, arrow). However, this effect was significantly reversed by chemical inhibitors of PARP-1 (Fig. 1A, right; Fig. 1B). To further evaluate apoptotic cell death, we observed the morphology of Hoechst 33342-stained nuclei. Whereas TPEN markedly increased the presence of bright and shrunken nuclei, which is a marker of apoptosis, NAM and AB reversed this change in morphology (Fig. 1C). Consistent with these findings, the genetic deletion of PARP-1 almost completely blocked TPEN-induced neuronal apoptosis (Fig. 1D).

Figure 1

Requirement for PARP-1 in TPEN-induced neuronal apoptosis. (A) LDH release or PI-positive cells (mean ± SEM, n = 4 cultures) in mouse cortical neuron cultures after 24-h exposure to TPEN ...

Taken together, we found that blockade of PARP-1 by chemical inhibitors (NAM or AB) or genetic deletion (PARP-1^−/−) markedly attenuated TPEN-induced death of cultured mouse cortical neurons, indicating that PARP-1 is essential for TPEN-induced neuronal apoptosis.

Poly(ADP-ribosyl)ation of p53 by PARP-1 augments the stability and activity of p53

Next, we investigated the PARylation of p53 in TPEN-induced neuronal apoptosis. Substantial PARylation of p53 was detected 1 h after TPEN treatment (Fig. 2A) and blocked by PARP inhibitors (Fig. 2B). In PARP-1^−/− cortical neuron cultures, PARylation by TPEN was not detected (Fig. 2C). Consistent with this observation, TPEN-induced accumulation and phosphorylation of p53 were markedly attenuated by chemical inhibitors (Fig. 2D) or genetic deletion of PARP-1 (Fig. 2E). These results strongly suggest that PARP-1 regulates the stability and activity of p53 via post-translational modification (i.e., PARylation) in TPEN-induced neuronal apoptosis.

Figure 2

Post-translational modification of p53 by PARP-1 in TPEN-induced neuronal apoptosis. (A) Immunoprecipitation (IP) and immunoblotting over the time course of p53 PARylation. Protein samples were prepared from nearly pure cortical ...

Induction of pro-apoptogenic proteins PUMA and NOXA is mediated by PARP-1 in zinc-depleted neuronal apoptosis

We previously showed that Bcl-2 homology domain 3 (BH3)-only proteins, such as PUMA and NOXA, are induced by TPEN in a p53-dependent manner (Ra et al., 2009). Here, we found that increases in BH3-only pro-apoptotic proteins were mediated by PARP-1. Induction of PUMA and NOXA expression by TPEN was markedly reduced by chemical inhibitors of PARP (Fig. 3A). In PARP-1^−/− neuronal cultures, the protein expression level of PUMA or NOXA was not increased by TPEN (Fig. 3B), indicating mediation by PARP-1. Bax, expression levels were not affected by TPEN in either PARP-1^+/+ or PARP-1^−/− cortical neuron cultures (Fig. 3B). Consistently, the chemical inhibition or genetic deletion of PARP-1 had no effect on Bax expression levels (Fig. 3B).

Figure 3

PARP-1 as an upstream regulator of TPEN-induced pro-apoptotic proteins. (A) RTPCR (left) and western blot analysis (right) of PUMA, NOXA, and Bax expression. RNA or protein samples were prepared from ...

Blockade of PARP-1 markedly diminished caspase-3 activation in zinc-depleted neuronal apoptosis

Next, we investigated the effects of PARP-1 on downstream events of TPEN-induced apoptosis, including cytochrome C release and caspase-3 activation. TPEN-induced cytochrome C release from mitochondria to the cytosol and nuclear condensation were completely blocked by the PARP inhibitor NAM (Fig. 4A). TPEN-induced caspase-3 activation was also blocked by chemical inhibitors (Figs. 4B–4C) or genetic deletion of PARP-1 (Figs. 4D–4E). Thus, PARP-1 appears to act as an upstream regulator of TPEN-induced neuronal apoptosis.

Figure 4

Essential role of PARP-1 as an upstream regulator of TPEN-induced neuronal apoptosis. (A) Confocal photomicrographs of cortical neuron cultures showing the translocation of cytochrome C from mitochondria to the cytosol ...

DISCUSSION

We demonstrated that PARP-1 is essential for TPEN-induced neuronal apoptosis via the regulation of p53 stability and activity. We previously showed that de novo protein synthesis of PUMA and NOXA is required for TPEN-induced neuronal apoptosis in a p53-dependent manner (Ra et al., 2009). Here, we showed that the chemical inhibition or genetic deletion of PARP-1 almost completely blocked the TPEN-induced increase in p53 stability and activity, induction of PUMA and NOXA, cytochrome C release, caspase-3 activation, and neuronal death, indicating an essential role for PARP-1 as an upstream regulator in TPEN-induced neuronal apoptosis.

Although we suggest that PARylation of p53 is the main regulatory mechanism of p53 stability and activity when neurons are exposed to zinc depletion stress, we cannot rule out other possible mechanisms. In particular, levels of p53 expression in control neuronal cultures from PARP-1^−/− mice were slightly higher than those in control neuronal cultures from PARP-1^+/+ mice (Fig. 2E). In addition, the expression of all Bcl-2 family proteins that were assessed in the present study, including PUMA, NOXA, Bax, and Bcl-xL, was also slightly higher in PARP-1^−/− neuronal cultures (Fig. 3B). Under PARP-1-deficient conditions, the DNA repair process may be damaged or modified, and expression of the tumor suppressor protein p53 and related genes could also be affected by the deletion of PARP-1. Our most important finding, however, is that there was no additional increase in levels of p53 or Bcl-2 family proteins by TPEN in PARP-1^−/− cortical neuron cultures (Fig. 2E; Fig. 3B). Furthermore, our results suggest that the relative increase in levels of pro-apoptotic Bcl-2 family proteins PUMA and Bax may be compensated by the simultaneous increase of the anti-apoptotic Bcl-2 family protein Bcl-xL (Fig. 3B). In other words, the lack of induction of apoptosis under normal conditions in PARP-1^−/− cortical neuron cultures may be due to a balance between pro-apoptotic and anti-apoptotic proteins. Future studies are needed to confirm this possibility.

Among members of the PARP gene family, PARylation is mainly catalyzed by PARP-1, PARP-2, and PARP-3 (Johansson, 1999). PARP-1 has two N-terminal zinc finger motifs and an automodification domain, whereas PARP-2 and PARP-3 have only a C-terminal catalytic domain (Johansson, 1999; Li and Chen, 2014). For PARP-1, displacement of zinc from the zinc finger by other metal ions leads to decreased PARP-1 activity (Mendes et al., 2011). However, the direct displacement of zinc from PARP-1 is likely not an underlying mechanism of TPEN-induced neuronal apoptosis, as we showed that PARylation is increased by TPEN and that TPEN-induced neuronal death is due to the chelation of zinc ions rather than other metal ions (Ahn et al., 1998). Some previous studies report that neutral endonuclease activity is regulated by intracellular zinc levels and that the depletion of intracellular free zinc by TPEN increases nuclease activity and DNA degradation (Marini and Musiani, 1998; Villalba et al., 1995; Widlak and Garrard, 2001). Therefore, DNA damage could trigger PARP-1 activation in TPEN-induced neuronal apoptosis. However, further studies are needed to completely understand how PARP-1 is activated in early stages of TPEN-induced apoptosis.

Although we show a requirement for PARP-1 in neuronal apoptosis, there is some controversy about the role of PARP-1 in apoptosis. For instance, PJ34, a potent inhibitor of PARP-1, independently kills tumor cells in a caspase-dependent manner (Gangopadhyay et al., 2011). Also, veliparib (ABT-888), another PARP-1 inhibitor, enhances the DNA damage response and increases the death of cancer cells in both p53-dependent and -independent manners (Nguyen et al., 2011). These discrepancies among studies could be due to differences among cell populations. Thus, additional studies are required to investigate different actions of PARP-1 in the death of non-dividing neurons and strongly proliferating cancer cells. Because several PARP-1 inhibitors have been developed to potentiate the cytotoxicity of ionizing radiation and anticancer drugs, our results provide important considerations for cancer research and advance our understanding of the mechanisms of neuronal apoptosis.

Article information

Mol. Cells.Apr 30, 2015; 38(4): 312-317.

Published online 2015-03-20. doi: 10.14348/molcells.2015.2142

Hyun-Lim Kim¹, Hana Ra¹, Ki-Ryeong Kim, Jeong-Min Lee, Hana Im, and Yang-Hee Kim^*

Department of Molecular Biology, Sejong University, Seoul 143-747, Korea

^*Correspondence: yhkim@sejong.ac.kr

Received June 2, 2014; Accepted January 19, 2015.

This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/.

Articles from Mol. Cells are provided here courtesy of Mol. Cells

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